1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaccttgctctcttaagattcaaacacccttttactctactgtttacacatctggtctttgcttgacatgcacttttgtctttctgttccacttttcagGTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTGAGATGATGTCAGGGCGCAGGTCGATGGACAAGAACCGCCCGAACGGGGA
species | Zea mays |
transcript | GRMZM2G132184_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTG GTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTGEST: gi|148928770|gb|EC873531.2|EC873531
genomic: TCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTGgtaagtatct ... cacttttcagGTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTG
EST: TCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTG GTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTGEST: gi|5499049|gb|AI854916.1|AI854916
genomic: TCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTGgtaagtatct ... cacttttcagGTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTG
EST: TCGAGTAATGGGAACCTATGGATATGCAGCACCAGA-TATGTCATGACTG GTCATCTGACATCAAAGAGTGATGTCTACAG
genomic: TCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTGgtaagtatct ... cacttttcagGTCATCTGACATCAAAGAGTGATGTCTACAG
tacacatctggtctttgcttgacatgcacttttgtctttctgttccacttttcagGTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTGAGATGATGTCAGGGCGCAGGTCGATGGACAAGAACCGCCCGAACGGGGA
gcttgac putative branch site (score: 58)
cacttttgtctttctg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaccttgctctcttaagattcaaacacccttttactctactgtttacacatctggtctttgcttgacatgcacttttgtctttctgttccacttttcagGTCATCTGACATCAAAGAGTGATGTCTACAGCTTCGGGGTGGTGCTTCTTGAGATGATGTCAGGGCGCAGGTCGATGGACAAGAACCGCCCGAACGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - cttgctc
- - - - - - - - - - - aaacacc
- - - - - - - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca