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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATACCATACATGAATTTGCAACGCCATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggtatgcctatatctctattaatgcataaagatacctatacacctattttggttgctgatttgtggtgtcatttttttggcag

Basic information

species Zea mays
transcript GRMZM2G132028_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132028_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
-------------CTCATACCATA--CATGAATTTGCAACGCCATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggtatgcctatatctctattaatgcataaagatacctatacacctattttggttgctgatttgtggtg--tcatttttttggcag--------------------------------------------------------------------------------------------------
              | |     |    ||     ||||||||| | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||  |  || | |         ||  ||| || || |      ||  ||| ||    || | | |||  | || |  |  | |                                                                                                   
GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgag--taaaccagcg-----gcgcaaaaatgcccacgtttttagcttg-ttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag

upper sequence: GRMZM2G132028_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 5'ss of exon 3
---------------CTCATACCATACATGAATTTGCAACGCCATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggta--------tgcctata-tctctattaatgcataaaga-----tacctatacacctattttggttgctgatttg--tggtgtcatttttttggcag--
                   ||     |||   | |||| ||||   |     |||||||||||||| | |||||||||  ||||||||| || ||||||||||        ||| || | || ||   | ||   || |      ||  | |  || | || |  | |   |  ||  | |||   |   |  | |    
GCTTTGACCTACCGCGAAGTAGTTGCCATCGTTATGCAGCGCCTCATCTCCATTGATGGCAAGGTCCGCACTGACAAGTGCTACCCTGCAGGTTTCATGGgtacgttatcttgcatacagtcacttgcactgtgcaatgtctttctaattctctacatgttgtaatcgtaaagatgattagtgctttgcgtaagacgcgc