1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTGCAACTGGATCTCATGTTGATGCCATTCCATTCTCAGGCAAATTTGATGGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttctgtctgcctataagtgttttcaccattcctgcagcaccattcttttactgttgtggttttgtccgtatgtaacgtggatgttttcccctc...
species | Zea mays |
transcript | GRMZM2G130034_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|71775247|gb|DR973125.1|DR973125
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|78086441|gb|DV514834.1|DV514834
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|148969605|gb|EE020450.2|EE020450
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|213178277|gb|FM185022.1|FM185022
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|31359313|gb|CD443670.1|CD443670
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|76015424|gb|DT942594.1|DT942594
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|50323473|gb|CO518599.1|CO518599
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|91873539|gb|EB403496.1|EB403496
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGGTATTATGTTTACATCAGAEST: gi|50324880|gb|CO520006.1|CO520006
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|91874398|gb|EB404355.1|EB404355
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAA-GATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|31361617|gb|CD445974.1|CD445974
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|148983478|gb|EE029496.2|EE029496
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|71441173|gb|DR822223.1|DR822223
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|149103753|gb|EE289159.2|EE289159
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|71427278|gb|DR808328.1|DR808328
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|31356201|gb|CD440558.1|CD440558
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|148940595|gb|EC885401.2|EC885401
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|78107618|gb|DV526036.1|DV526036
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGAEST: gi|148944452|gb|EC889567.2|EC889567
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
EST: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAG GTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
genomic: GGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttc ... tgtcatacagGTCTGCTTTCCTGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAACTGGATCTCATGTTGATGCCATTCCATTCTCAGGCAAATTTGATGGTGTTGTTGGAGTTCTGGGTGCTCTTGAGGCAATTAGTTTGCTGAAAAGgtaaccgttctgtctgcctataagtgttttcaccattcctgcagcaccattcttttactgttgtggttttgtccgtatgtaacgtggatgttttcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG