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gtatgagcctacttcctttcaaacaaaatatgatagttctcaggaaaatatgatgattttccaactaataaagtcatggtatccttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCGCCAGTCTGCAGCACATATTTCAAAGAACCGTGGAGTAGAGCTTTCAGA
species | Zea mays |
transcript | GRMZM2G130034_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|88749671|gb|DY533812.1|DY533812
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: GAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|33466598|gb|CF243647.1|CF243647
genomic: GAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|24768371|gb|CA403500.1|CA403500
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAACCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|78022951|gb|DV491338.1|DV491338
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|50333648|gb|CO528774.1|CO528774
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|71775246|gb|DR973124.1|DR973124
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|211502325|gb|FL069734.1|FL069734
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|91874397|gb|EB404354.1|EB404354
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|71441172|gb|DR822222.1|DR822222
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|148944451|gb|EC889566.2|EC889566
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|78107617|gb|DV526035.1|DV526035
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|5714250|gb|AI944235.1|AI944235
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|148983477|gb|EE029495.2|EE029495
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|71427277|gb|DR808327.1|DR808327
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCEST: gi|149103752|gb|EE289158.2|EE289158
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG ATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTGgtatgagcct ... cttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTC
ctcaggaaaatatgatgattttccaactaataaagtcatggtatccttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCGCCAGTCTGCAGCACATATTTCAAAGAACCGTGGAGTAGAGCTTTCAGA
tatcctt CT-rich tract
aaaatatgatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagcctacttcctttcaaacaaaatatgatagttctcaggaaaatatgatgattttccaactaataaagtcatggtatccttgatgcagATGTAAGAGATATTGATGAGAAGAGAAGGAATGATGTCATTGAGAAGATTCGCCAGTCTGCAGCACATATTTCAAAGAACCGTGGAGTAGAGCTTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT