1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGACGTCTACAGTTTCGGTGTGATCCTTCTGGAGCTACTCACCGGGCGGAAGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatcaatgccttgtgccaaaatctgttgactgactgtaatctcctgactgactgtgaacgccattgcattggttag
species | Zea mays |
transcript | GRMZM2G127984_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAGEST: gi|76015507|gb|DT942677.1|DT942677
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
EST: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAGEST: gi|86473195|gb|DY239565.1|DY239565
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
EST: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAGEST: gi|62525897|gb|DN828545.1|DN828545
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
EST: AGCCGGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTTGATCCGAAGEST: gi|86471135|gb|DY237505.1|DY237505
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
EST: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAGEST: gi|26455225|gb|CA826808.1|CA826808
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
EST: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAGEST: gi|47962209|gb|CN844918.1|CN844918
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
EST: AGCCGGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGG GCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTTGATCCGAAG
genomic: AGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatc ... cattggttagGCCACTCCAAGGTTGAGCGAAGACAAAGTGAAGCAGTGTGTCGATCCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGTCTACAGTTTCGGTGTGATCCTTCTGGAGCTACTCACCGGGCGGAAGCCAGTCGACCACACCATGCCGAAAGGCCAGCAAAGCCTTGTTACCTGGgtaatcaatcaatgccttgtgccaaaatctgttgactgactgtaatctcctgactgactgtgaacgccattgcattggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG