1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaaataccttgaccatttttttggatttttggatgtattacatataaaatactcctgagggaaggtgatctgtatatattctgacttagtaagttgcagGTGGGATGAAAGTGCAGTCTCACTACTCCCAGAATACATGAAGGATTTCTACATGTATTTGTTGAAGACATTTTCATCGTTTGAGAATGAGTTAGGACCA
species | Zea mays |
transcript | GRMZM2G127087_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCACATGCTAATTCTTATGAGAGTATGCAACTTGCAGAAGCAGTCGAAAG GTGGGATGAAAGTGCCCTCCTCACTACTCCCAGAATACATGAAGGATTTCTEST: gi|33103699|gb|CF063659.1|CF063659
genomic: TCACATGCTAATTCTTATGAGAGTATGCAACTTGCAGAAGCAGTCGAAAGgtatgtataa ... taagttgcagGTGGGATGAAAGTGCAGTC-TCACTACTCCCAGAATACATGAAGGATTTCT
EST: TCACATGCTAATTCTCATGAGAGTATGCAACTTGCAGAAGCAGTCGAAAG GTGGGATGAAAGTGCAGTCTCACTACTCCCAGAATACATGAAGGATTTCTA
genomic: TCACATGCTAATTCTTATGAGAGTATGCAACTTGCAGAAGCAGTCGAAAGgtatgtataa ... taagttgcagGTGGGATGAAAGTGCAGTCTCACTACTCCCAGAATACATGAAGGATTTCTA
taaaatactcctgagggaaggtgatctgtatatattctgacttagtaagttgcagGTGGGATGAAAGTGCAGTCTCACTACTCCCAGAATACATGAAGGATTTCTACATGTATTTGTTGAAGACATTTTCATCGTTTGAGAATGAGTTAGGACCA
ttctgac putative branch site (score: 2)
tgtatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaataccttgaccatttttttggatttttggatgtattacatataaaatactcctgagggaaggtgatctgtatatattctgacttagtaagttgcagGTGGGATGAAAGTGCAGTCTCACTACTCCCAGAATACATGAAGGATTTCTACATGTATTTGTTGAAGACATTTTCATCGTTTGAGAATGAGTTAGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA