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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCCGGTTCTAGATGATGAGCATGTTAAGGACGTTCATCTCGATCCTTTAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagcctttttttcactttcctgttgttgctctcatgtattgtactaccacatatgatgtttatattagagaaaagtgttgtgttcactgttttt...

Basic information

species Zea mays
transcript GRMZM2G126218_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126218_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g02450.2 (Oryza sativa), 5'ss of exon 6
CATTCCGGTTCTAGATGATGAGCATGTTAAGGACGTTCATCTCGATCCTTTAGCTGGCCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCGGAAAAGgttaggcagcctttttttcactttcctgttgttgctctcatgtattg-tactaccacatatgatgtttatattag-----agaaaagtgttgtgttcactgttttt-------------
  ||||  |||  |||||||| |   ||||||| | |||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | ||||  |||||    | | |      |  | ||| |  |  | |||    | ||  |  ||      || ||    |||      |  || ||             
TCTTCCTATTCCGGATGATGATCTCATTAAGGATGCTCATCTTGATCCATCAGCTGGTCCAGTAGATGCCTTTTGCCTTCTGGTTCTTGATCCAGAAAAGgt-aggtagc-tattttcgactttttgctggatctagaaagatgttgatgtttgctcatgctttcttagtgctatttgtcagcaatcctttgatcctgcaattgttatactgtacttag