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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcgatcggcgccgcttaattccttcctaaagatctctagcttcttcttctagatgcggctcgatctgtgtggtgctggattgctgatgcgagtcgtctcgtggtcgtggccggccggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCCAAGGTGGCCGTGTCGTTCACGCACATCATCAAGAGCGGGGAGCCGGCAT

Basic information

species Zea mays
transcript GRMZM2G125850_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211236186|gb|FL162466.1|FL162466
EST:     TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCC                         GTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
genomic: TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCCgtgagtatcg ... ggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
EST: gi|37417331|gb|CF646318.1|CF646318
EST:     TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCC                         GTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
genomic: TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCCgtgagtatcg ... ggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
EST: gi|24934556|gb|CA452774.1|CA452774
EST:     TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCC                         GTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
genomic: TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCCgtgagtatcg ... ggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
EST: gi|50335221|gb|CO530347.1|CO530347
EST:     TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCC                         GTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
genomic: TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCCgtgagtatcg ... ggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
EST: gi|89249586|gb|DY621372.1|DY621372
EST:     TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCC                         GTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC
genomic: TCGCCGAGGCGCCCCAGACGGACCTCGACTTCTGGAAGGCGCTCACTCCCgtgagtatcg ... ggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgctggattgctgatgcgagtcgtctcgtggtcgtggccggccggccgagcagGTTGCGATCGCGCACACGATCGGGCACGTCGCGGCGACGGTGAGCATGGCCAAGGTGGCCGTGTCGTTCACGCACATCATCAAGAGCGGGGAGCCGGCAT
          tgctgat  putative branch site (score: 3)