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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtgtggcctacttcacgatgcagtctccctagttttgatctcctgtaggtgcagggcagcagcgctgaacattttgctgctccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG

Basic information

species Zea mays
transcript GRMZM2G123495_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123495_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g04590.3 (Oryza sativa), 3'ss of exon 3
gtaagagtgtggcctacttcacgatgcagtctccctagttttgatctcctgtaggtg--cagggcagcagcgctgaacattttgctgctccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG
        ||  |  | | ||  |       | | |  |  |||        |  ||  || |  | | |   |  | ||  |     |  | |  |||| ||||| ||||||||||| || || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||   |  | |   | |  
--------gtaac--aatgcagaacttgactttcttgatgctgaataatctaaattggacatgttaactg-attatatatggtctatatgttctatcagGTTCTGCTATCACTGGACCCATCGGGAAGGAGTGTGCTGACCTTTGGCCTAGGATAGCTAGTGCAGCAAATGCTATTGTCTGAGCTTGTTTGAATGAATT

upper sequence: GRMZM2G123495_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S280_69V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------------------------------------------------------------------------------gtaagagtgtggcctacttcacgatgcagtctccctagttttgatctcctgtaggtgcagggcagcagcgctga-acattttgctgctccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG
                                                                                          || |  || ||   | |||  ||      | | |   ||| |||  |   | | | ||            |||| |  ||||   ||  |||||||||| ||||| |||||||| |||||||| ||||||||||| ||  | |||||||||||||||||||| || ||||| |||||||||    | | ||||  |  
gtacgcagatatttccctcaaatatctttgacgtcagattcgttttagcaaaagatccagttagcgaatgagaatgattggcagatatatgtcatcgtatgttgttcttatcggaatgttgtgcac-gttatgacttttgggatgagcctactgatt-tactgataggttttttggcaacttttgcagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGCGCCGATTTGTGGCCTAGGATTGCTAGTGCTGCCAATGCCATTGTCTGAGGGCAATAGTTGTAATA

upper sequence: GRMZM2G123495_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S15_152V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------------------------------gtaagagtgtggcc-tacttcacgatgcagtctccctagttttgatctcctgtaggtgcagg-gcagcagcgctgaac--attttgctg-ctccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG
                                                                                             |||| |   | | || ||     | ||  | | || ||  | || |   || | ||     | ||        |||  || ||  || |  ||| |||||| ||||| |||||||| || ||||| || ||||| || ||| | |||||||||||||| ||||| || ||||||||||| |||    | | |||| |   
gtaatctcacttacatctatttgattttaggaaatacattcagttggtctgttctgtgaaatctgtcttacagtagttacctacttgattttaaagattacagtcatatttttttgttcaaccactcttgtactcatgtgaagttgttgggactggagtttgatcaaaccaatgtttttggcaacttgtgcagGTTCTGCTATCACTGGTCCCATTGGAAAAGAGTGTGCCGACTTGTGGCCTAGGATTGCCAGTGCTGCTAATGCTATTGTATGAGTGCAATAGTTGCGCAT

upper sequence: GRMZM2G123495_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S62_136V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------gtaagagtgtggcctact--tcacgatgcagtctccctagttttgatctc-ctgta-ggtgcagggcag-----cagcgctgaaca---ttttgc-tgctcct--tttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG
                       | |  |||  | || |   |   ||||  | ||     |    | | |  ||||| |||| ||||  |     ||| |||||  |   || ||| || |  |  | |||||| ||||||||||||||||| || || ||||||||||| ||| | ||||| |||||||| || || || || || ||||| ||| |     | ||||||| 
gtgagtgtatgcagccggtgcattgatggtgcagtctgcagattgggatg-ggcctagggggggggggtatagctgtaaggtggagggtggattggcagagctgatgagggttgtgcgtggttgtaatgtgcagGTTCTGCCATCACTGGACCGATCGGGAAGGAGTGCGCAGACTTGTGGCCGAGGATTGCGAGCGCTGCCAACGCGATTGTTTGAGAGGGTAGTTTGGGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78122158|gb|DV540542.1|DV540542
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCCTTTGGACT
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACC-TTTGGCCT
EST: gi|76915389|gb|DV165962.1|DV165962
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|71297595|gb|DR784748.1|DR784748
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211478466|gb|FL137419.1|FL137419
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|21331067|gb|BQ486448.1|BQ486448
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|21480859|gb|BQ577542.1|BQ577542
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|78108626|gb|DV527044.1|DV527044
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|13126242|gb|BG316812.1|BG316812
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211376168|gb|FL137410.1|FL137410
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|78108627|gb|DV527045.1|DV527045
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211351061|gb|FL060542.1|FL060542
EST:     ATNATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|9731761|gb|BE510513.1|BE510513
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTACGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211481344|gb|FL137434.1|FL137434
EST:     ATNATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGA
EST: gi|211481343|gb|FL137433.1|FL137433
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|6227077|gb|AW155781.1|AW155781
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211351060|gb|FL060541.1|FL060541
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|9731405|gb|BE510157.1|BE510157
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211376164|gb|FL137406.1|FL137406
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211351054|gb|FL060535.1|FL060535
EST:     ATAATGCTGGAGTCATTGTGAACCCCAASGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTG
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTG
EST: gi|113852230|gb|DW971843.1|DW971843
EST:     TGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: TGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|148932705|gb|EC876678.2|EC876678
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|76915387|gb|DV165961.1|DV165961
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|28984071|gb|BQ538896.2|BQ538896
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCAAGATGAAAG                         AATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|60357657|gb|DN224630.1|DN224630
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|30306879|gb|CD001552.1|CD001552
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|148952784|gb|EC898770.2|EC898770
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|60338712|gb|DN205685.1|DN205685
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|4226451|gb|AI396558.1|AI396558
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCTCTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211297090|gb|FL187052.1|FL187052
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|60349205|gb|DN216178.1|DN216178
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211351056|gb|FL060537.1|FL060537
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211376162|gb|FL137404.1|FL137404
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|9254234|gb|BE344702.1|BE344702
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211491743|gb|FL090529.1|FL090529
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211351058|gb|FL060539.1|FL060539
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|30306880|gb|CD001553.1|CD001553
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|6227047|gb|AW155751.1|AW155751
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|148952785|gb|EC898771.2|EC898771
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|60344345|gb|DN211318.1|DN211318
EST:     GTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: GTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
EST: gi|211351052|gb|FL060533.1|FL060533
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGGCCT
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGG-CCT
EST: gi|9254233|gb|BE344701.1|BE344701
EST:     ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAG                         GATCTGCTATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA
genomic: ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 228

ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 196

ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 213

ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 136

ATAATGCTGGAGTCATTGTGAACCCCAAGGGCGAGATGAAAGgtaagagtgt ... ccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctcctgtaggtgcagggcagcagcgctgaacattttgctgctccttttgcagGATCTGCCATCACTGGACCTATTGGCAAGGAGTGCGCTGACCTTTGGCCTAGGATTGCTAGTGCAGCAAATGCTATTGTCTGATACTACTGGTTGGGAGG
 ttttgat  putative branch site (score: 136)
                                   ttttgctgctcctttt  putative PPT
                               aacatttt  TA-rich tract