1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgtgttccccttaccctgctgctttctattgcatttgtttttttctcttattgatttacgtatgtgtgttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCGATCTGCGGAGGTGGCACCAGTCATCTCCAAGGCCCTTGAAGACGTTTT
species | Zea mays |
transcript | GRMZM2G123305_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|31359716|gb|CD444073.1|CD444073
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|60400680|gb|DN233487.1|DN233487
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|67041329|gb|CO467584.1|CO467584
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: TCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|40334570|gb|CK368640.1|CK368640
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|76293265|gb|DV032833.1|DV032833
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|211040937|gb|FK998650.1|FK998650
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|211189642|gb|FL055471.1|FL055471
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCT CTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCCGCTGGTTAGGCCAGGC
genomic: GCTCGAGGTGATGTCGCCCTCGGCCGAGTACCCAGACGAAGGATCCGTCTgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCC-GCTGGTTAGGCCAGGC
ttctattgcatttgtttttttctcttattgatttacgtatgtgtgttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCGATCTGCGGAGGTGGCACCAGTCATCTCCAAGGCCCTTGAAGACGTTTT
tattgat putative branch site (score: 9)
tttttttctcttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgttccccttaccctgctgctttctattgcatttgtttttttctcttattgatttacgtatgtgtgttttgcgtagCTGTTGAGTTCCACATGCCGCCCATCTGCTCCCCGCTGGTTAGGCCAGGCCGATCTGCGGAGGTGGCACCAGTCATCTCCAAGGCCCTTGAAGACGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA