1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCTCCGGAGCGGAGGGCGAGGAGGTCGAAAGGAGGAAGGAGACCATGGAGCTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtaccactgctgcttcacatcatctaaatccatttcgattttggtttgcgcaacagttgttacgtagtagcacagcagaactcaagcctagctagc...
species | Zea mays |
transcript | GRMZM2G122160_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGEST: gi|211430440|gb|FL005796.1|FL005796
genomic: CAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
EST: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGEST: gi|9794332|gb|BE552640.1|BE552640
genomic: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
EST: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGGEST: gi|211430439|gb|FL005795.1|FL005795
genomic: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
EST: CTGTTCCCGCAGAGCGTCKGGTTCAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATEST: gi|211430443|gb|FL005799.1|FL005799
genomic: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAAT
EST: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAG GGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
genomic: CTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtacca ... tatttgtcagGGAGGAGCAAGGAGATAAAGAGAAGCCTAAGCAGCTCACAATCTTCTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCGGAGCGGAGGGCGAGGAGGTCGAAAGGAGGAAGGAGACCATGGAGCTGTTCCCGCAGAGCGTCGGGTTCAGCATCAAGGATGCTGCTGCCCCTAGgtgcgtaccactgctgcttcacatcatctaaatccatttcgattttggtttgcgcaacagttgttacgtagtagcacagcagaactcaagcctagctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC