Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatttctgtgatgttaggttagctagcctaaggatctagtgaggcgtgaggccgcgatacttttggtgggttttaatgctgactgtgctttttctcttggtgtttgttgcgattctgcag

Basic information

species Zea mays
transcript GRMZM2G120674_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 5'ss of exon 1
TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatt-------------tctgtgatgttaggttagctagcctaagg-atctagtgaggcgtgaggccgcgatacttttggtggg--------ttttaat-----------gctgactgtgct---------ttttctcttggtgtttgttgcgattctgcag
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |  ||| |                  |||  |  | ||||||    |||| | || |||| |    || || |       || |  | ||||         |||||||           | ||| |  | |         ||| ||  |  ||| || | ||||| |||||
TGATGCGGGACTTCAAGCGGCTGCAGCAGGACCCGCCCGCCGGAATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtagccacccacgcgccgtagccaccctcatctcaggcgctaggttttggagccgaggggatctcgcagagcttgtgattttcctattcgttgtggagttattttttttaattttttgtgtgggttgatttggttctgatgtcgtttgcttgtcatgtctggtacgattttgcag

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S91_87V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatttctgtgatgttaggttagctagcctaaggatctagtgaggcgtgaggccgcgatacttttggtgggttttaatgctgactgtgctttttctcttggtgtttgttgcgattctgcag
||||||| |||||||||||||||||||| || || || ||||||||||||||||| ||| | |||||||| |||||| | ||||| || ||||||||||||||    |||       ||   ||| || | |  ||  ||  ||   | | |      ||  |   |||| | |  ||| | |     ||    |  | | | |   | |                       
TGATGCGCGACTTCAAGCGCCTGCAGCATGATCCTCCGGCCGGCATCAGCGGCGCCCCGCAGGACAACAACATCATGTTGTGGAATGCTGTCATATTCGGgta----cccaaactcctccccgattttcgttctgcatgctcaattgtgtcg------gtatgaatgcgaaattcgtggggcgcggagatttgcatggcggtgtcggttt-----------------------

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatttc-tgtgatgttaggttagctagcctaaggatctagtgaggcgtgaggccgcgatacttttggtgggttttaatgctgactgtgctttttctcttggtgtttgttgcgattctgcag
||||||| |||||||||||| |||| || || || || ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || ||||||||||| |     ||||   |  | |  | ||  |||   | |  |  ||   | ||| ||  |  | | |   |       |   ||   | ||  |  | |                                  
TGATGCGTGACTTCAAGCGCTTGCAACATGATCCTCCGGCCGGCATCAGCGGCGCTCCGCAGGACAACAATATCATGCTGTGGAATGCTGTGATATTCGGgtaacgaagtgcctccctggtttcgttttttgttcaattgtgtccggtcgtggtgcggaattcgccgggcgtgggaggcgcacgtcggagtgtcggtttt----------------------------------

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatttctgtgatgttaggttagctagcctaaggatctagtgaggcgtgaggccgcgatacttttggtgggttttaatgctgactgtgctttttctcttggtgtttgttgcgattctgcag
||||||| || ||||||||||| ||||| || || || || |||||||||||||| ||  | ||||||||||||||| | ||||| || || || |||||||     | |||  |    |    | ||||| |   |       || |||        |                                                                          
TGATGCGAGATTTCAAGCGCCTACAGCATGATCCTCCGGCAGGCATCAGCGGCGCTCCACAGGACAACAATATCATGTTGTGGAATGCTGTGATCTTCGGgtgagttctcgcgaaacctt----tcttagggtttttgaatgtcggttctttcttacag--------------------------------------------------------------------------

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16328 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatttctgtgatgttaggttagctagcctaaggatctagtgaggcgtgaggccgcgatacttttggtgggttttaatgctgactgtgctttttctcttggtgtttgttgcgattctgcag
||||||| |||||||||||||| || || || || ||||| || ||||||||||||||| | |||||||| ||||||||||||||||| || || ||||||||  |      |   | | |   |      |        ||   | | | |||  ||                                                                           
TGATGCGAGACTTCAAGCGCCTCCAACACGATCCTCCCGCGGGAATCAGCGGCGCGCCGCAGGACAACAACATCATGCTCTGGAACGCGGTGATCTTCGGgtaggaatgtagccgct-cggcactagggtatcgatctaactcttggtttcgtgttgcag-------------------------------------------------------------------------

upper sequence: GRMZM2G120674_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ17802 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagcccgcctatttctgtgatgttaggttagctagcctaaggatctagtgaggcgtgaggccgcgatacttttggtgggttttaatgctgactgtgctttttctcttggtgtttgttgcgattctgcag
||||||| |||||||||||||| || || || || ||||| || ||||||||||||||| | |||||||| ||||||||||||||||| || || ||||||||  |      |   |     ||   |||| ||      ||||   ||| | |   ||||  || |                                                                  
TGATGCGAGACTTCAAGCGCCTCCAACACGATCCTCCCGCGGGAATCAGCGGCGCGCCGCAGGACAACAACATCATGCTCTGGAACGCGGTGATCTTCGGgtaggaatgtagccgctc----gacactagggta-tcgatctaac--tcttg-gtttcgtgttgcag------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357087|gb|DN224060.1|DN224060
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|6012426|gb|AW061863.1|AW061863
EST:     ATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: ATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211149048|gb|FL300334.1|FL300334
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|149106021|gb|EE291669.2|EE291669
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211149042|gb|FL300328.1|FL300328
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|20802675|gb|BQ293725.1|BQ293725
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211149040|gb|FL300326.1|FL300326
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211268543|gb|FL032951.1|FL032951
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211149047|gb|FL300333.1|FL300333
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|148929954|gb|EE285763.2|EE285763
EST:     GGCGCGCCGTACGACAACAATATCATGTTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60359324|gb|DN226297.1|DN226297
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211147600|gb|FL300320.1|FL300320
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|37378572|gb|CF625982.1|CF625982
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|71430726|gb|DR811776.1|DR811776
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|9731376|gb|BE510128.1|BE510128
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|16926752|gb|BM079820.1|BM079820
EST:     AATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGGTGACACGCCGTGGGATGGAG
genomic: AATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|40485810|gb|CK394750.1|CK394750
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|74233323|gb|DT641237.1|DT641237
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|71315558|gb|DR794383.1|DR794383
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|6021288|gb|AW066216.1|AW066216
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60344768|gb|DN211741.1|DN211741
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|71430725|gb|DR811775.1|DR811775
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|149106022|gb|EE291670.2|EE291670
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCCTATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60341249|gb|DN208222.1|DN208222
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|71435217|gb|DR816267.1|DR816267
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60357084|gb|DN224057.1|DN224057
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|9952861|gb|BE639444.1|BE639444
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|9731385|gb|BE510137.1|BE510137
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|148932939|gb|EE285764.2|EE285764
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211268544|gb|FL032952.1|FL032952
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211409222|gb|FL440202.1|FL440202
EST:     CGTACGACAACAATATCATGCTCTGGGAACTCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: CGTACGACAACAATATCATGCTCT-GGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|32865559|gb|CF005241.1|CF005241
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|76286530|gb|DV026098.1|DV026098
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60672663|gb|DN475359.1|DN475359
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60352412|gb|DN219385.1|DN219385
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|74233324|gb|DT641238.1|DT641238
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|71756699|gb|DR954636.1|DR954636
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211534683|gb|FL445701.1|FL445701
EST:     CGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: CGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60359587|gb|DN226560.1|DN226560
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60346843|gb|DN213816.1|DN213816
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|113702935|gb|EE680439.1|EE680439
EST:     TGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: TGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211357324|gb|FL465449.1|FL465449
EST:     CGCCGTCATATTCGG                         GCCGGATGACACGCAGTGGGATGGAG
genomic: CGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|211266116|gb|FL032945.1|FL032945
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|6952329|gb|AW424397.1|AW424397
EST:     ATATCATGCTCTGGAACGCCGTCAT-TTCGG                         GCCGGATGACACGCC-TGGGATGGAG
genomic: ATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|149089468|gb|EE178713.2|EE178713
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG
EST: gi|60342255|gb|DN209228.1|DN209228
EST:     GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGACACGCCGTGGGATGGAG
genomic: GGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 26 (downstream exon)
Score: 247

TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG


Block sizes: 49 (upstream exon), 26 (downstream exon)
Score: 367

TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG


Block sizes: 49 (upstream exon), 26 (downstream exon)
Score: 339

TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG


Block sizes: 49 (upstream exon), 26 (downstream exon)
Score: 332

TGATGCGGGACTTCAAGCGCCTGCAGCAGGACCCGCCCGCCGGCATCAGCGGCGCGCCGTACGACAACAATATCATGCTCTGGAACGCCGTCATATTCGGgtatcagccc ... gattctgcagGCCGGATGACACGCCGTGGGATGGAG