Sequence
atgc intronic sequence ATGC exonic sequencegtaactgaaccattagaagatagaatggagaaagccctgttcagtcctccattatctaaacaaagagtcgaatttgatgtacgacacatcaacgagctgcatggtaccacacttgtaatttccccacctaattcccttgttcatttatggaatatactatttttcattgcaaagatgcattttcagGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGTTAGAGCATCCAACCACGCTGGAAAAGCTTGTTGGCGTTGATATTTCTCGAAAAGGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G120661_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g06970.1 (Oryza sativa), 3'ss of exon 7
gtaactgaaccattagaagatagaatggagaaagccctgttcagtcctccattatctaaacaaagagtcgaatttgatgtacgacacatcaacgagctgcatggtaccacacttgtaatttccccacctaattcccttgttcatttatggaatatacta-tttttcattgcaaagatgcatt--ttcagGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGTTAGAGCATCCAACCACGCTGGAAAAGCTTGTTGGCGTTGATATTTCTCGAAAAGGCC
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------------------------------------------------------------------------------------------------------------------gtaaatattcttctcatcctacttccatatttgccaagcatattagcttatcactattgaagtaaatttgttcagGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGCTTGAGCATCCAACAACCCTTGAAAAAGTTGTCGGTGTTGACATTTCTCGGAAGGGTC
upper sequence: GRMZM2G120661_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g06970.1 (Oryza sativa), 3'ss of exon 6
gtaactgaaccattagaagatagaatggagaaagccctgttcagtcctccattatctaaacaaagagtcgaatttgatgtacgacacatcaacgagctgcatggtaccacacttgtaatttccccacctaattcccttgttcatttatggaatatactatttttcattgcaaagatgcattttcagGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGTTAGAGCATCCAACCACGCTGGAAAAGCTTGTTGGCGTTGATATTTCTCGAAAAGGCC
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-------------------------------------------------------------gtgaggtccaatctta-acacctcagtctgataattttcat--tacca-gcttg-aatttggctg---aagcactatgctcaagttttaa-----ccatccttgcagACAAT--TGCTTCTTGGAGTTCTCTGTAAAGGTATTGCAGGTAAC-----TGAACCATT---AGAAGATAGAATG-----GAAAAAGCCTTGTTTAATCCTCCTTTATCTAAACA--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcccttgttcatttatggaatatactatttttcattgcaaagatgcattttcagGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGTTAGAGCATCCAACCACGCTGGAAAAGCTTGTTGGCGTTGATATTTCTCGAAAAGGCC
cattttc CT-rich tract
atttatggaatatact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgaaccattagaagatagaatggagaaagccctgttcagtcctccattatctaaacaaagagtcgaatttgatgtacgacacatcaacgagctgcatggtaccacacttgtaatttccccacctaattcccttgttcatttatggaatatactatttttcattgcaaagatgcattttcagGTTGATTTTGGCTGTGGATCTGGTAGCCTTCTTGATTCATTGTTAGAGCATCCAACCACGCTGGAAAAGCTTGTTGGCGTTGATATTTCTCGAAAAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA