1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttagacatgtttggttttggttcttccacagcgactgagtgaaatctgaaatatcctgtttaccaattattcacttctcatgtttacaattctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTTTGCGTTTGCTACGAGTTTGATACAGAGGAGATATCCTGATATGATAACT
species | Zea mays |
transcript | GRMZM2G119749_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGACATCTACCAGGCTGTTTTGGTTAGCATGAGCATCAGATGTGCAAG GAAAATATTTAATGTGGTGGATGGCGACCCTGCCCCAAGAGCTGAAGTTTTEST: gi|211538728|gb|FL481469.1|FL481469
genomic: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAGgtttcctttt ... tctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTT
EST: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAG GAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTTEST: gi|6827987|gb|AW331630.1|AW331630
genomic: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAGgtttcctttt ... tctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTT
EST: GCTGGCATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAG GAAAATATTTAATGTGGTGGATGNCGGCCCTGCCCCAAGAGCTGAAGTTTTEST: gi|29130034|gb|CB380738.1|CB380738
genomic: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAGgtttcctttt ... tctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTT
EST: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAG GAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTTEST: gi|89247959|gb|DY619745.1|DY619745
genomic: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAGgtttcctttt ... tctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTT
EST: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAG GAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTT
genomic: GCTGACATCTACCAGGCTGTCTTGGCTAGCATGAGCATCAGATGTGCAAGgtttcctttt ... tctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTT
ctgaaatatcctgtttaccaattattcacttctcatgtttacaattctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTTTGCGTTTGCTACGAGTTTGATACAGAGGAGATATCCTGATATGATAACT
ttctattcc CT-rich tract
tttacaattctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagacatgtttggttttggttcttccacagcgactgagtgaaatctgaaatatcctgtttaccaattattcacttctcatgtttacaattctattccagGAAAATATTTAATGTGGTGGATGACGACCCTGCCCCAAGAGCTGAAGTTTTTGCGTTTGCTACGAGTTTGATACAGAGGAGATATCCTGATATGATAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - -catgttt
- - - - - - - - -tggttct
- - - - - - - - - - - - -ccacagc