1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAAGATATAACGCAGAAAAAGGATGGCTGAATCTTATTGATGATCCAAAACTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacctgctgaatttcattccatttcaccattttaatttctactaattcagtttgagggatatttgttggcatgctgattagtagctctgtttaaa...
species | Zea mays |
transcript | GRMZM2G119749_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTTEST: gi|89249953|gb|DY621739.1|DY621739
genomic: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
EST: AATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCCCGGAAACAGAAGTGEST: gi|71302148|gb|DR787180.1|DR787180
genomic: AATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
EST: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTTEST: gi|78120197|gb|DV538581.1|DV538581
genomic: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
EST: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTTEST: gi|71773038|gb|DR970956.1|DR970956
genomic: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
EST: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTTEST: gi|91878057|gb|EB408014.1|EB408014
genomic: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
EST: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTTEST: gi|89247959|gb|DY619745.1|DY619745
genomic: CTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
EST: GTATTCCGTTTAGGGGGAATATATGGGCCTGGAAGAAG TGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
genomic: GTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacct ... tttactgcagTGCTTTGGACACCTTAGCGAAGAGCAAATCTTTGTCACGGAAACAGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGATATAACGCAGAAAAAGGATGGCTGAATCTTATTGATGATCCAAAACTGTCAGCTTTTGTATTCCGTTTAGGTGGAATATATGGGCCTGGAAGAAGgttttgacctgctgaatttcattccatttcaccattttaatttctactaattcagtttgagggatatttgttggcatgctgattagtagctctgtttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG