Sequence
atgc intronic sequence ATGC exonic sequence...gagtcgagggtaataacaaatcatgctatgtgcagtgcaccatataagagattttccttagaaaactactctgtaacgctttacgctttcttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119749_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g15660.1 (Oryza sativa), 3'ss of exon 4
---gagtcgagggtaat--aacaaatcatgctatgtgcagtgcaccatataagagattttccttagaaaactactctgtaacgctttacgctttcttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
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caacttttcaggttaactgaacgtatcataa-atgtgcaaactagccctgaaaaatttttctgccatacaataacttgtaa----ttattattatcatttttcagGTGTGTATGGTGATTGTGGTGGTGCATGGGTTGATGAGGA
upper sequence: GRMZM2G119749_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g15660.2 (Oryza sativa), 3'ss of exon 1
---gagtcgagggtaat--aacaaatcatgctatgtgcagtgcaccatataagagattttccttagaaaactactctgtaacgctttacgctttcttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA------------------------------------------------------------
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caacttttcaggttaactgaacgtatcataa-atgtgcaaactagccctgaaaaatttttctgccatacaataacttgtaa----ttattattatcatttttcagGTGTGTATGGTGATTGTGGTGGTGCATGGGTTGATGAGGAGTAAGATAAGTGGCTTTCTGTAAGTGCTTCTGCAATAATTGTTTAACTGAAAGCTGAAGA
upper sequence: GRMZM2G119749_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G19690.1 (Arabidopsis thaliana), 3'ss of exon 4
gagtcgagggtaataacaaatcatgctatgtgcagtgcaccatataagagattttccttagaaaactactctgtaacgctttacgctttcttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
||| | | | || | || | || || || |||| || | || || | | |||| | ||||||||||||||||| ||||||||||||| | ||| |||| |
---------gtattttcctttttaactttcctcattacatca-atgcttctgcttccacagtagacaggaacttacaatacttctctttgatgcttgcagGTGTGTATGGAGATTGTGGTGGTGCGTGGGTCAATGAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76021548|gb|DT948718.1|DT948718EST: AATACTCGGCCATGGTAATCTTGAATGGCTATGCTACCTTTCGTCAACAA GTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
genomic: AATACTCGGCCATGGTAATCTTGAATGGCTATGCTACCTTTCGTCAACAAgtaagctctc ... ttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagattttccttagaaaactactctgtaacgctttacgctttcttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
ttcttac putative branch site (score: 2)
ctttacgctttctt CT-rich tract
ttagaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagtcgagggtaataacaaatcatgctatgtgcagtgcaccatataagagattttccttagaaaactactctgtaacgctttacgctttcttacttgcagGTGTGTATGGTGATTGTGGTGGTGTATTGGTTGATGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG