1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGGAACGCATTGGATCAGGAGATGAGACTAGATGTGCAGAGAATATGGAAAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAGgtaagctgtctttcagtgttatgaatttgaatgcctagcattttcagtaacggacttagtttttttggctatctaatctgcactagtgtccatcttgtag
species | Zea mays |
transcript | GRMZM2G119248_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAG GCCCGTTTCCCATTTCTTGACGAGAACGTGATAAAAACTTTGTTGGAAATTEST: gi|60358033|gb|DN225006.1|DN225006
genomic: AAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAGgtaagctgtc ... catcttgtagGCCCGTTTCCCATTTCTTGACGAGAACGTGATAAAAACTTTGTTGGAAATT
EST: AAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAG GCCCGTTTCCCATTTCTTGACGAGAACGTGATAAAAACTTTGTTGGAAATTEST: gi|93011720|gb|EB637240.1|EB637240
genomic: AAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAGgtaagctgtc ... catcttgtagGCCCGTTTCCCATTTCTTGACGAGAACGTGATAAAAACTTTGTTGGAAATT
EST: AAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAG GCCCGTTTCCCATTTCTTGACGAGAACGTGATAAAAACTTTGTTGGAAATT
genomic: AAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAGgtaagctgtc ... catcttgtagGCCCGTTTCCCATTTCTTGACGAGAACGTGATAAAAACTTTGTTGGAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAACGCATTGGATCAGGAGATGAGACTAGATGTGCAGAGAATATGGAAAAGGAATATGGGAAGAGATGATAGGTGCATCTCTGATCATGGCAAGGAGgtaagctgtctttcagtgttatgaatttgaatgcctagcattttcagtaacggacttagtttttttggctatctaatctgcactagtgtccatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG