1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtaccatctgttcatgttcccgtttcgttgttaattagacggttaaaaagaacatttaatagggcgtgtctcgtccgatatttatctcgggatgg...
species | Zea mays |
transcript | GRMZM2G117531_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTAEST: gi|71771385|gb|DR969322.1|DR969322
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTAEST: gi|148959535|gb|EC905510.2|EC905510
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtaccatctgttcatgttcccgtttcgttgttaattagacggttaaaaagaacatttaatagggcgtgtctcgtccgatatttatctcgggatgg
- - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA