Sequence
atgc intronic sequence ATGC exonic sequence...cttagaactcccacgtttattacaacattatttttaatcacattgcatcttttgttttaatcaattatcacatcctctaagtatcttttgaaaataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G117531_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g55180.1 (Oryza sativa), 3'ss of exon 3
-cttagaactcccacgtttattacaacattatttttaatcacattgcatcttttgttttaatcaattatcacatcctctaagtatcttttgaaa---ataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAG
| | | | || ||| | || || |||| |||| | | | ||||||| ||| || || | || ||||| | || |||||| || ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||||| | ||
aatagggatcctcatgttaaatataaatttata---aatcgtacta-acgatttgtttctatcgatcattttacccactaagcagctattgaaattgctactagATGGCAGATGCTGGCTACCACTGCTTTGCTCCTGATTGGATAGGATTTGGGTTCAGTGATATGCCACAGCCCGGATATGGATTCGACTACACAG
upper sequence: GRMZM2G117531_T04 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G03260.1 (Glycine max), 3'ss of exon 3
---cttagaactcc----cacgtttattacaacattatttttaatcacatt-gcatcttttgttttaatcaattatcacatcctctaagtatcttttgaaaataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAG
|| || || | || |||| | | | |||| ||||| ||| || || ||| | || | |||| | || || | | ||| || || | ||||| || | ||||||||||||||| |||||||| |||||||| |||||||| | |||||||| |||||||| || | | | ||
gtcatttgacctacattacatgtttttcagtatcttatgattaatactatttaaattttctgtggttattatttattttaatttccc----tcctcttaaa----cagTTGTCGGATGCCGGGTTCCACTGCTTTGCACCAGACTGGATAGGATTTGGTTTCAGTGACAAACCACAACCAGGATATGGTTTTAATTACACAG
upper sequence: GRMZM2G117531_T04 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G22840.1 (Glycine max), 3'ss of exon 3
cttagaactcccacgtttattacaacat-tatttttaatcacattgcatcttttgtt-ttaatcaattatcacatcctctaagtatcttttgaaaataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAG
|| | | || || | | | ||||||| | | | | | | |||| |||| | | | ||| | | | | || || || | ||||| || | |||||||||||||||||||||||| |||||||| |||||||| | ||||| || |||||||| || | | | ||
-tttatattgtcattttacctttattacatatttttcagtatgtaatgattaatactattaaatggttattatttattttaatttccctcctctta-aacagTTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAG
upper sequence: GRMZM2G117531_T04 (Zea mays), 3'ss of exon 3
lower sequence: AT1G52510.2 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------cttagaactcccacgtttattacaacattatttttaatcacattgcatcttttgttt-ta-atcaa---ttatcacatcctctaagtatcttttgaaa-ataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAG
||| | || | || | | || | | | || || ||| | ||| | || || || | | ||| | | || | || ||| || || |||||||||| | || |||||||||||||||||||| ||||| || |||||||| | || || |||||||| || || | | | ||
gtgctacactgaatcttgaatcatgtgtctatatgggaaacaattgtttctaatgaaagactcttatgatttccaatgaatcatgtgtatgtatatgaagcttgagtggatcttttgtgtgttcccaacaatgtaatagTTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71771385|gb|DR969322.1|DR969322EST: TTCACGGAGCTCCTACTCAGTCATTTAGTTACCGGGTGGTTATGGCTCAG ATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGG
genomic: TTCACGGAGCTCCTACTCAGTCATTTAGTTACCGGGTGGTTATGGCTCAGgttgcttcac ... aaaataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcttttgttttaatcaattatcacatcctctaagtatcttttgaaaataaaagATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAG
ttttaat putative branch site (score: 3)
taagtatcttttgaaa TA-rich tract