1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacatattttaatttttaatgcatgtggggattactgaaattgttgtgcagacatgtgttttgagattgtgtgctatttgtgcctgattttattgcacagGCAGGGTGGTCTATCTCAAAGATTTTTGAAAGTTGTTTCTTATTATGGTCTCACGACTCTGCCATATAAACTGGTCTGTAAGCTTGTTGGTGCCAATCTC
species | Zea mays |
transcript | GRMZM2G117016_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACGGCAGGTGTGAAGCTTCAGCAGAGGCAGTTGCGCCCGATGAGCCAT GCAGGGTGGTCTATCTCAAAGATTTTTGAATGTTGTTTCTTATTATGGTCT
genomic: CCACGGCAGGTGTGAAGCTTCAGCAGAGGCAGTTGCGCCCGATGAGCCATgtgggacctt ... tattgcacagGCAGGGTGGTCTATCTCAAAGATTTTTGAAAGTTGTTTCTTATTATGGTCT
gtgcagacatgtgttttgagattgtgtgctatttgtgcctgattttattgcacagGCAGGGTGGTCTATCTCAAAGATTTTTGAAAGTTGTTTCTTATTATGGTCTCACGACTCTGCCATATAAACTGGTCTGTAAGCTTGTTGGTGCCAATCTC
gcctgat putative branch site (score: 14)
ttttatt CT-rich tract
tgattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatattttaatttttaatgcatgtggggattactgaaattgttgtgcagacatgtgttttgagattgtgtgctatttgtgcctgattttattgcacagGCAGGGTGGTCTATCTCAAAGATTTTTGAAAGTTGTTTCTTATTATGGTCTCACGACTCTGCCATATAAACTGGTCTGTAAGCTTGTTGGTGCCAATCTC
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - tgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctga