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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caacgcaagataagatgaagtagaccgacgagaaccataacatcggtgtattattctcttatagcaatactgtgaataatgaaatatatatccgctgcagGCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTGTCAGGGCCTCAGCCCTATGAACGTCAGATACTTGTATGCGGCTATCTTC

Basic information

species Zea mays
transcript GRMZM2G114001_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211204797|gb|FL181898.1|FL181898
EST:     CTGTTCTTTCATCTCTATCTTGGTTCCATCCTAATGGATCCAAATCTATG                         GCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTG
genomic: CTGTTCTTTCATCTCTATCTTGGTTCCATCCTAATGGATCCAAATCTATGgtcagttccc ... tccgctgcagGCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTG
EST: gi|211204798|gb|FL181899.1|FL181899
EST:     CTGTTCTTTCATCTCTATCTTGGTTCCATCCTAATGGATCCAAATCTATG                         GCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTG
genomic: CTGTTCTTTCATCTCTATCTTGGTTCCATCCTAATGGATCCAAATCTATGgtcagttccc ... tccgctgcagGCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTG
EST: gi|149081895|gb|EE171057.2|EE171057
EST:     CTGTTCTTTCATCTCTATCTTGGTTCCATCCTAATGGATCCAAATCTATG                         GCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTG
genomic: CTGTTCTTTCATCTCTATCTTGGTTCCATCCTAATGGATCCAAATCTATGgtcagttccc ... tccgctgcagGCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtattattctcttatagcaatactgtgaataatgaaatatatatccgctgcagGCCGCCAAGCAAATCACGGATGACGATGAACTGTGTCTTCTCCTGCCACTGTCAGGGCCTCAGCCCTATGAACGTCAGATACTTGTATGCGGCTATCTTC
                         tgtgaataatgaaata  TA-rich tract