Sequence
atgc intronic sequence ATGC exonic sequence...atgctgagatttgattttcactgatcattagagtatatgatggtaggacatctatttttatctgattattatattaatcttgcttacgtactatatatagGAATTTCCTTCGTGGTCTAGAAGTGTTTGGCCGTGGTAAATGGAAGAACATCTCCAAGTACTTCGTCCCCACAAGGACACCAGTGCAGATCTCTAGCCAT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32866208|gb|CF005890.1|CF005890EST: CCTAATCAAAGGAGGCATGCAGTGAAGTTTTGGACTACAGATGAGCACAG GAATTTCCTTCGTGGTCTAGAAGTGTTTGGCCGTGGTAAATGGAAGAACAT
genomic: CCTAATCAAAGGAGGCATGCAGTGAAGTTTTGGACTACAGATGAGCACAGgtctttaatt ... ctatatatagGAATTTCCTTCGTGGTCTAGAAGTGTTTGGCCGTGGTAAATGGAAGAACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggacatctatttttatctgattattatattaatcttgcttacgtactatatatagGAATTTCCTTCGTGGTCTAGAAGTGTTTGGCCGTGGTAAATGGAAGAACATCTCCAAGTACTTCGTCCCCACAAGGACACCAGTGCAGATCTCTAGCCAT
tgcttac putative branch site (score: 2)
tatttttatctgatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgctgagatttgattttcactgatcattagagtatatgatggtaggacatctatttttatctgattattatattaatcttgcttacgtactatatatagGAATTTCCTTCGTGGTCTAGAAGTGTTTGGCCGTGGTAAATGGAAGAACATCTCCAAGTACTTCGTCCCCACAAGGACACCAGTGCAGATCTCTAGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
atgctga
- - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - -tatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac