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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaatatgtcaatttaacatatccttaactgccttcattttggcttactatcagcagtctaggcaacttatagtgcatgcattgttttaactaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA

Basic information

species Zea mays
transcript GRMZM2G110143_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89757947|gb|DY687314.1|DY687314
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|89757947|gb|DY687314.1|DY687314
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|89757947|gb|DY687314.1|DY687314
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149005364|gb|EE039916.2|EE039916
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149005364|gb|EE039916.2|EE039916
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149005364|gb|EE039916.2|EE039916
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149107293|gb|EE189175.2|EE189175
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149107293|gb|EE189175.2|EE189175
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149107293|gb|EE189175.2|EE189175
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|76290040|gb|DV029608.1|DV029608
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|76290040|gb|DV029608.1|DV029608
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|76290040|gb|DV029608.1|DV029608
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|32833902|gb|CD973580.1|CD973580
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGGCACAG                    
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGG-C----CA-AGgtgaagactt ... ctagg
EST: gi|50335677|gb|CO530803.1|CO530803
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50335677|gb|CO530803.1|CO530803
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50335677|gb|CO530803.1|CO530803
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|78076983|gb|DV505417.1|DV505417
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|78076983|gb|DV505417.1|DV505417
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|78076983|gb|DV505417.1|DV505417
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50325433|gb|CO520559.1|CO520559
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50325433|gb|CO520559.1|CO520559
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50325433|gb|CO520559.1|CO520559
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74243434|gb|DT651348.1|DT651348
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74243434|gb|DT651348.1|DT651348
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74243434|gb|DT651348.1|DT651348
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|89756357|gb|DY686407.1|DY686407
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|89756357|gb|DY686407.1|DY686407
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|89756357|gb|DY686407.1|DY686407
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74237054|gb|DT644968.1|DT644968
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74237054|gb|DT644968.1|DT644968
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74237054|gb|DT644968.1|DT644968
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|71420359|gb|DR805069.1|DR805069
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         AGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAG
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAG
EST: gi|71321797|gb|DR797591.1|DR797591
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|71321797|gb|DR797591.1|DR797591
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|71321797|gb|DR797591.1|DR797591
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|31558121|gb|CD527333.1|CD527333
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|31558121|gb|CD527333.1|CD527333
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|31558121|gb|CD527333.1|CD527333
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|211253499|gb|FL469937.1|FL469937
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGGCACAG                    
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGG-C----CA-AGgtgaagactt ... ctagg
EST: gi|32835620|gb|CD975298.1|CD975298
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGGCACAG                    
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGG-C----CA-AGgtgaagactt ... ctagg
EST: gi|74241218|gb|DT649132.1|DT649132
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74241218|gb|DT649132.1|DT649132
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|74241218|gb|DT649132.1|DT649132
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|30307256|gb|CD001929.1|CD001929
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|30307256|gb|CD001929.1|CD001929
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|30307256|gb|CD001929.1|CD001929
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|60400418|gb|DN233225.1|DN233225
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGGCACAG                    
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGG-C----CA-AGgtgaagactt ... ctagg
EST: gi|50328942|gb|CO524068.1|CO524068
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50328942|gb|CO524068.1|CO524068
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50328942|gb|CO524068.1|CO524068
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149101748|gb|EE287365.2|EE287365
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149101748|gb|EE287365.2|EE287365
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|149101748|gb|EE287365.2|EE287365
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|71325769|gb|DR799565.1|DR799565
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|71325769|gb|DR799565.1|DR799565
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|71325769|gb|DR799565.1|DR799565
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50328977|gb|CO524103.1|CO524103
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50328977|gb|CO524103.1|CO524103
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-
EST: gi|50328977|gb|CO524103.1|CO524103
EST:     GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG                         G
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacag-

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 32 (upstream exon), 47 (downstream exon)
Score: 3

CCACAAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA


Block sizes: 48 (upstream exon), 44 (downstream exon)
Score: 3

CCACAAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA


Block sizes: 42 (upstream exon), 37 (downstream exon)
Score: 4

CCACAAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA


Block sizes: 13 (upstream exon), 48 (downstream exon)
Score: 3

CCACAAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ctaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatcagcagtctaggcaacttatagtgcatgcattgttttaactaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA
                                       ttttaac  putative branch site (score: 3)
                                   attgttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctaatatgtcaatttaacatatccttaactgccttcattttggcttactatcagcagtctaggcaacttatagtgcatgcattgttttaactaggcacagAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGAAGTAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - gccttca
- - - - - - - - - - - - - - - - - - - - - - - - - tcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc