1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatttctaatatgtcaatttaacatatccttaactgccttcattttggcttactatcagcagtctaggcaacttatagtgcatgcattgttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGA
species | Zea mays |
transcript | GRMZM2G110143_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGGGTGGGAAATCAAGAGACAGGTCAAGGAGCGGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|74237054|gb|DT644968.1|DT644968
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|149005364|gb|EE039916.2|EE039916
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|71321794|gb|DR797590.1|DR797590
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|74241217|gb|DT649131.1|DT649131
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTTCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|211526332|gb|FL357659.1|FL357659
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|89757947|gb|DY687314.1|DY687314
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|78076982|gb|DV505416.1|DV505416
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|149107293|gb|EE189175.2|EE189175
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|50328977|gb|CO524103.1|CO524103
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|32833902|gb|CD973580.1|CD973580
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|71325766|gb|DR799564.1|DR799564
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|71420359|gb|DR805069.1|DR805069
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG --A--GA--CAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|71325769|gb|DR799565.1|DR799565
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|88752174|gb|DY536315.1|DY536315
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAGGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAEST: gi|8401368|gb|BE057002.1|BE057002
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCA
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG ACACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|76290039|gb|DV029607.1|DV029607
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|50335676|gb|CO530802.1|CO530802
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|71321797|gb|DR797591.1|DR797591
genomic: GAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|149101748|gb|EE287365.2|EE287365
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|74237053|gb|DT644967.1|DT644967
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: AAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|211420441|gb|FL363214.1|FL363214
genomic: AAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|211253499|gb|FL469937.1|FL469937
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|89756357|gb|DY686407.1|DY686407
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|50328941|gb|CO524067.1|CO524067
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|32846542|gb|CD986223.1|CD986223
genomic: GTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGGGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|33100333|gb|CF060293.1|CF060293
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGCCAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|60400418|gb|DN233225.1|DN233225
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|31558121|gb|CD527333.1|CD527333
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|50335677|gb|CO530803.1|CO530803
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|74241218|gb|DT649132.1|DT649132
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|30307256|gb|CD001929.1|CD001929
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|74243434|gb|DT651348.1|DT651348
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|78076983|gb|DV505417.1|DV505417
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|32835620|gb|CD975298.1|CD975298
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|89247003|gb|DY618789.1|DY618789
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: TCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|50328942|gb|CO524068.1|CO524068
genomic: TCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|76290040|gb|DV029608.1|DV029608
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|50325433|gb|CO520559.1|CO520559
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
ttggcttactatcagcagtctaggcaacttatagtgcatgcattgttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGA
ggcttac putative branch site (score: 3)
ttgtttt putative PPT
attgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttctaatatgtcaatttaacatatccttaactgccttcattttggcttactatcagcagtctaggcaacttatagtgcatgcattgttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGAGAAAGGCATGTCCATGATAGAGATAGGGACTATCGTCGTCGGAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG