1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtagtacgtgcacgcacgtcttctccggtccattccattcctgcaccaatcgaaaacctaaaatatggtgcttgtgtttgtccatcagAGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGGCGAGTGTGACCGCCAGGAGGGACGCAGCCATCTCCGGCGGCGTTTTCGGCTCGCATATTCAGCTG
species | Zea mays |
transcript | GRMZM2G109252_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTCGTCAGAGCCTCTGCCACCTACCTCGTCGCCACGCTTACAGACGCG AGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGGCGAGTGTGACCGCCAGGEST: gi|148931173|gb|EC873893.2|EC873893
genomic: GCGTCGTCAGAGCCTCTGCCACCTACCTCGTCGCCACGCTTACAGACGCGgtacgtagta ... tgtccatcagAGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGGCGAGTGTGACCGCCAGG
EST: GCGTCGTCAGAGCCTCTGCCACCTACCTCGTCGCCACGCTTACAGACGCG AGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGCCGAGTGTGACCEST: gi|71321185|gb|DR797296.1|DR797296
genomic: GCGTCGTCAGAGCCTCTGCCACCTACCTCGTCGCCACGCTTACAGACGCGgtacgtagta ... tgtccatcagAGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGGCGAGTGTGACC
EST: GCGTCGTCAGAGCCTCTGCCACCTACCTCGTCGCCACGCTTACAGACGCG AGGCGCTGGTCCGAGATGTTCCCCAGCG
genomic: GCGTCGTCAGAGCCTCTGCCACCTACCTCGTCGCCACGCTTACAGACGCGgtacgtagta ... tgtccatcagAGGCGCTGGTCCGAGATGTTCCCCAGCG
tccattcctgcaccaatcgaaaacctaaaatatggtgcttgtgtttgtccatcagAGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGGCGAGTGTGACCGCCAGGAGGGACGCAGCCATCTCCGGCGGCGTTTTCGGCTCGCATATTCAGCTG
acctaaa putative branch site (score: 6)
tttgtcc putative PPT
aaaacctaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtagtacgtgcacgcacgtcttctccggtccattccattcctgcaccaatcgaaaacctaaaatatggtgcttgtgtttgtccatcagAGGCGCTGGTCCGAGATGTTCCCCAGCGTCGTGGCGAGTGTGACCGCCAGGAGGGACGCAGCCATCTCCGGCGGCGTTTTCGGCTCGCATATTCAGCTG
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