Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgtacgtacgtacgtacgtatagcaaccgcgcgcgaaatatagacatgcacgatccttttgttctctcgccgacgtttgccttgggtggtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACATCTGCACCCGGGCGTGCCTCAAGTGCTGCGGCGTCTGCCGCTGCGTGCC

Basic information

species Zea mays
transcript GRMZM2G107003_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211104847|gb|FL162447.1|FL162447
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCG-AAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|20811096|gb|BQ295574.1|BQ295574
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGTGTGCGACGTGCGGCGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|91055869|gb|EB166287.1|EB166287
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102379|gb|FL162438.1|FL162438
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|91878522|gb|EB408479.1|EB408479
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|78120357|gb|DV538741.1|DV538741
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|28985313|gb|BQ538386.2|BQ538386
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCNACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211104845|gb|FL162445.1|FL162445
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|18181536|gb|BM382746.1|BM382746
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCNACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102374|gb|FL162433.1|FL162433
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|60340068|gb|DN207041.1|DN207041
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|71427417|gb|DR808467.1|DR808467
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211104853|gb|FL162453.1|FL162453
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099900|gb|FL162425.1|FL162425
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|148943626|gb|EC888690.2|EC888690
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|91878521|gb|EB408478.1|EB408478
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|60394563|gb|DN227433.1|DN227433
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|60352937|gb|DN219910.1|DN219910
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102368|gb|FL162427.1|FL162427
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102372|gb|FL162431.1|FL162431
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102369|gb|FL162428.1|FL162428
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAAC
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGG-CGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAAC
EST: gi|211104852|gb|FL162452.1|FL162452
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099895|gb|FL162420.1|FL162420
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|60346486|gb|DN213459.1|DN213459
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|60400373|gb|DN233180.1|DN233180
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|78075699|gb|DV504133.1|DV504133
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|50333926|gb|CO529052.1|CO529052
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211104842|gb|FL162442.1|FL162442
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099898|gb|FL162423.1|FL162423
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102371|gb|FL162430.1|FL162430
EST:     TACCCACCACGGGCTCCTCCGCCGCACCAGCATCSTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: TACCCACCACGGGCTCCTCCGCCGCACCAG-ATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099894|gb|FL162419.1|FL162419
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099893|gb|FL162418.1|FL162418
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102377|gb|FL162436.1|FL162436
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCS-AAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102375|gb|FL162434.1|FL162434
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211102370|gb|FL162429.1|FL162429
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCCCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCG
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCG
EST: gi|30031878|gb|CB833729.1|CB833729
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099897|gb|FL162422.1|FL162422
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|211099891|gb|FL162416.1|FL162416
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|71765648|gb|DR963585.1|DR963585
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|60400559|gb|DN233366.1|DN233366
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
EST: gi|71766292|gb|DR964229.1|DR964229
EST:     CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAG                         ACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA
genomic: CTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 324

CTTGGCCTGTTCGTGCTCGGCCAGGCTGCTCCGGGCGCCTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACATCTGCACCCGGGCGTGCCTCAAGTGCTGCGGCGTCTGCCGCTGCGTGCC


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 11

CTTGGCCTGTTCGTGCTCGGCCAGGCTGCTCCGGGCGCCTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACATCTGCACCCGGGCGTGCCTCAAGTGCTGCGGCGTCTGCCGCTGCGTGCC


Block sizes: 43 (upstream exon), 48 (downstream exon)
Score: 6

CTTGGCCTGTTCGTGCTCGGCCAGGCTGCTCCGGGCGCCTACCCACCACGGGCTCCTCCGCCGCACCAGATCGTCGACCTCGCCAAAGgtacgtgtac ... gtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACATCTGCACCCGGGCGTGCCTCAAGTGCTGCGGCGTCTGCCGCTGCGTGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgcacgatccttttgttctctcgccgacgtttgccttgggtggtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACATCTGCACCCGGGCGTGCCTCAAGTGCTGCGGCGTCTGCCGCTGCGTGCC
             ttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtgtacgtacgtacgtacgtatagcaaccgcgcgcgaaatatagacatgcacgatccttttgttctctcgccgacgtttgccttgggtggtcggtgcagACTGCGGGGGCGCGTGCGACGTGCGGTGCGGCGCGCACTCGCGCAAGAACATCTGCACCCGGGCGTGCCTCAAGTGCTGCGGCGTCTGCCGCTGCGTGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC