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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAACGAGGTGCCCAGGTCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtcttacaaattgtgctactgttctgtactcgtattttgcttagttcacgttttatgagcttgatgtatacttatccctgttcttctgaacaa...

Basic information

species Zea mays
transcript GRMZM2G105425_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105425_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g54390.1 (Oryza sativa), 5'ss of exon 6
GGGGAACGAGGTGCCCAGGTCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtcttacaaattgtgctactgttctgtactcgtattttgcttag---ttcacgttttatgagcttgatgtatact-tatccctgttcttctgaacaa-
|| ||  ||||||| |||||||||||||| || ||||||||||||||||||| ||| || ||||||||||||  ||    || | || ||  ||   ||   |||   ||| |  |  ||   | ||    |||| |  ||    ||  |   ||   |   ||| ||   |  
GGAGAGAGAGGTGCTCAGGTCCTTGTTGATCCTGAACTTGTTGACTATCTGACTTCCACACTTGAAAAGgtgagtt----tatatat-gttatataatttcttacctatatatgacacagaactacagaagttataacattatcttaccccacatgttttcacttatgttgatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88752841|gb|DY536982.1|DY536982
EST:     TCCTTGTTGACCCAGAACTTGTTGACTTTCTGATTTCTACCCTTGAAAAG                         GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: gi|60355226|gb|DN222199.1|DN222199
EST:     TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG                         GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: gi|60398114|gb|DN230930.1|DN230930
EST:     TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG                         GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: gi|29577131|gb|CB617243.1|CB617243
EST:     TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG                         GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: gi|78090612|gb|DV518986.1|DV518986
EST:     TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG                         GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: gi|76292416|gb|DV031984.1|DV031984
EST:     TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG                         GTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGGGGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGAA
EST: gi|67013256|gb|CO442005.1|CO442005
EST:     TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAG                         GTGGNGGAAAGT-GGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGA
genomic: TCCTTGTTGACCCAGAACTTGTTGACTATCTGATTTCTACCCTTGAAAAGgtggattgtc ... ttttctacagGTGG-GGAAAGTTGGTGTTTCATGCACTCAGATTCCTTTGCTTGCTCTAGA