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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttcaaatcattaatcctataaataacaactgccattcaatttctgcacattttcaatatgatgtgaatggaggaatgcttttgtactaacttacctttttccttgtttgtggtttccctgttgcagATAATCCTGTATGTGGAACTGTAT

Basic information

species Zea mays
transcript GRMZM2G105192_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426677|gb|DR807727.1|DR807727
EST:     CAGATATTGGTCATGCCGCCTTTGGAGCCACCGGCCGTATAGCCATCTCA                         ATAATCCTGTATGTGGAACTGTAT
genomic: CAGATATTGGTCATGCCGCCTTTGGAGCCACCGGCCGTATAGCCATCTCAgtatggttca ... cctgttgcagATAATCCTGTATGTGGAACTGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatgcttttgtactaacttacctttttccttgtttgtggtttccctgttgcagATAATCCTGTATGTGGAACTGTAT
                                         tttccctgtt  CT-rich tract
       ttttgta  TA-rich tract