Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211389932|gb|FL388839.1|FL388839EST: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTNTTCGCCTTGCTCTCAGCAG
genomic: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCT---CAGgtacgctcct ... taggcagc
EST:
gi|211500708|gb|FL332824.1|FL332824EST: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCTCAG CTAGCTCTTTGATCCCTGTTGGATTGGATGGAGGTCCGTGGCAGTGCACCC
genomic: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCTCAGgtacgctcct ... taggcagcagCTAGCTCTTTGATCCCTGTTGGATTGGATGGAGGTCCGTGGCAGTGCACCC
EST:
gi|28909875|gb|CB331143.1|CB331143EST: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCTCAG G
genomic: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCTCAGgtacgctcct ... taggcagcag-
EST:
gi|28909875|gb|CB331143.1|CB331143EST: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCTCAG G
genomic: TTTCCGTCATTGATGCCGGTGCAGACCGTTTTTCTTCGCCTTGCTCTCAGgtacgctcct ... taggcagcag-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taataaatctctcgagtctttctgctggccacaatcttcctaacctaggcagcagCTAGCTCTTTGATCCCTGTTGGATTGGATGGAGGTCCGTGGCAGTGCACCCAGCATGAAGCCAAAGGTGGAGCCGCCGTTGGAGGCTTCACACGACTGGG
tcctaac putative branch site (score: 1)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgctcctgccctggctgaattgcactacatatgagcgagcatatggcaatctaataaatctctcgagtctttctgctggccacaatcttcctaacctaggcagcagCTAGCTCTTTGATCCCTGTTGGATTGGATGGAGGTCCGTGGCAGTGCACCCAGCATGAAGCCAAAGGTGGAGCCGCCGTTGGAGGCTTCACACGACTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG