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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAGGGATGCCAATGAGAGAAGCTGCCCCCCAACCTGTTCCAATTGGGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaatgatcaaactatttattggttgctcctatttcttttaatcaatggtgctcattactgttctgtgttgcag

Basic information

species Zea mays
transcript GRMZM2G102829_T04
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37399906|gb|CF637295.1|CF637295
EST:     GGGCGCTAGCCACTGCACTTGTTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|31363532|gb|CD447889.1|CD447889
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|37378111|gb|CF625717.1|CF625717
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|37374159|gb|CF623416.1|CF623416
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|17969970|gb|BM276739.1|BM276739
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|211302758|gb|FL258854.1|FL258854
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|6918773|gb|AW400303.1|AW400303
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGTAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60359019|gb|DN225992.1|DN225992
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|37396074|gb|CF635324.1|CF635324
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|17921846|gb|BM259482.1|BM259482
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60400534|gb|DN233341.1|DN233341
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|211220228|gb|FL431842.1|FL431842
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|33099338|gb|CF059298.1|CF059298
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|6526993|gb|AW216219.1|AW216219
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGA
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGA
EST: gi|213192910|gb|FM189718.1|FM189718
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGA
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGA
EST: gi|211096390|gb|FL340976.1|FL340976
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|40334217|gb|CK368287.1|CK368287
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|5439311|gb|AI820232.1|AI820232
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60356688|gb|DN223661.1|DN223661
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|19770297|gb|BQ035018.1|BQ035018
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|40337375|gb|CK371445.1|CK371445
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|78112284|gb|DV530678.1|DV530678
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60351104|gb|DN218077.1|DN218077
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|45847731|gb|CN071674.1|CN071674
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|5398787|gb|AI812131.1|AI812131
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|5455723|gb|AI833413.1|AI833413
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|13381612|gb|BG458392.1|BG458392
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|6827949|gb|AW331592.1|AW331592
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|67018578|gb|CO447327.1|CO447327
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|19822453|gb|BQ048477.1|BQ048477
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCT
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCT
EST: gi|38688311|gb|CK145342.1|CK145342
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTG
EST: gi|113703965|gb|EE681469.1|EE681469
EST:     CCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: CCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|33096997|gb|CF056957.1|CF056957
EST:     AGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: AGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|6539103|gb|AW225242.1|AW225242
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|67014795|gb|CO443544.1|CO443544
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|213172574|gb|FM189508.1|FM189508
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|16378740|gb|BI992585.1|BI992585
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|21809770|gb|BQ668088.1|BQ668088
EST:     CAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: CAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|22543036|gb|BU093474.1|BU093474
EST:     ACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGG-GAGAACCTG-ATCCTCTTGGTGAACAGCTGGAACGTGAGCAG
genomic: ACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|15589568|gb|BI674184.1|BI674184
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60358484|gb|DN225457.1|DN225457
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|89756261|gb|DY686348.1|DY686348
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60395672|gb|DN228542.1|DN228542
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|4776304|gb|AI665307.1|AI665307
EST:     TAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: TAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|213169268|gb|FM184459.1|FM184459
EST:     GCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|5268845|gb|AI770809.1|AI770809
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCT
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCT
EST: gi|211302756|gb|FL258852.1|FL258852
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|211275608|gb|FL308974.1|FL308974
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAAATCAGCAGAGACTT                         ATGCTTGGAGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|38688310|gb|CK145341.1|CK145341
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|31354439|gb|CD438796.1|CD438796
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|213171329|gb|FM188868.1|FM188868
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|17921518|gb|BM259169.1|BM259169
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|60399861|gb|DN232671.1|DN232671
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|88752828|gb|DY536969.1|DY536969
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTTTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|5456117|gb|AI833807.1|AI833807
EST:     CTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: CTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|89246953|gb|DY618739.1|DY618739
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|116826442|gb|EC870236.1|EC870236
EST:     GGCGCTAGCCACTGCACTTGACTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGCGCTAGCCACTGCACTTG-CTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|18650206|gb|BM499025.1|BM499025
EST:     TGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: TGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|30705960|gb|CD058984.1|CD058984
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|71432876|gb|DR813926.1|DR813926
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|33092472|gb|CF052466.1|CF052466
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|6538954|gb|AW225093.1|AW225093
EST:     GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: GGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
EST: gi|33095623|gb|CF055617.1|CF055617
EST:     AGATCAGCAGAGACTT                         ATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG
genomic: AGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 713

GATGGGAGGGATGCCAATGAGAGAAGCTGCCCCCCAACCTGTTCCAATTGGGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAGGCTGCCAAGGTCACTGGCATGCTTTTGGAGATGGATCAGACGGAGGTTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 734

GATGGGAGGGATGCCAATGAGAGAAGCTGCCCCCCAACCTGTTCCAATTGGGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAGGCTGCCAAGGTCACTGGCATGCTTTTGGAGATGGATCAGACGGAGGTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 725

GATGGGAGGGATGCCAATGAGAGAAGCTGCCCCCCAACCTGTTCCAATTGGGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAGGCTGCCAAGGTCACTGGCATGCTTTTGGAGATGGATCAGACGGAGGTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 365

GATGGGAGGGATGCCAATGAGAGAAGCTGCCCCCCAACCTGTTCCAATTGGGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaat ... tgtgttgcagATGCTTGGTGAGAACCTGTATCCTCTTGTTGAACAGCTGGAACGTGAGCAGGCTGCCAAGGTCACTGGCATGCTTTTGGAGATGGATCAGACGGAGGTTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGGGAGGGATGCCAATGAGAGAAGCTGCCCCCCAACCTGTTCCAATTGGGGCGCTAGCCACTGCACTTGCTAACGCCCCACCAGATCAGCAGAGACTTgtatgagaatgatcaaactatttattggttgctcctatttcttttaatcaatggtgctcattactgttctgtgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA