1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacggttccagccctcctacaatttatctgctgtccaattctgtaccattgttttataaagtttcttgtttcacaaaagaaaaccatgtctattcttaagttagctcatggtttttactacatactgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGTGAAGACGATCCTGAGGGGCATAATAGAGAAGAGACAGAAGGCAGCCAAG
species | Zea mays |
transcript | GRMZM2G102318_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTC TCTCCTGCCAACEST: gi|31354539|gb|CD438896.1|CD438896
genomic: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTCgtacggttcc ... tgctcttcagTCTCCTGCCAAC
EST: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTC TCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGTEST: gi|148973471|gb|EE024569.2|EE024569
genomic: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTCgtacggttcc ... tgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGT
EST: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTC TCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGTEST: gi|148962212|gb|EE013028.2|EE013028
genomic: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTCgtacggttcc ... tgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGT
EST: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTC TCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGTEST: gi|67030045|gb|CO458794.1|CO458794
genomic: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTCgtacggttcc ... tgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGT
EST: GCTGAACGCCTTGTTCAATCTTTCAAGATAAATTACATCCCTGGCTTCTC TCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGT
genomic: GCTGAACGCCTTGTTCAATCTTTCAAGACAAATTACATCCCTGGCTTCTCgtacggttcc ... tgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGT
aaaccatgtctattcttaagttagctcatggtttttactacatactgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGTGAAGACGATCCTGAGGGGCATAATAGAGAAGAGACAGAAGGCAGCCAAG
ctgctcttc CT-rich tract
tattcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggttccagccctcctacaatttatctgctgtccaattctgtaccattgttttataaagtttcttgtttcacaaaagaaaaccatgtctattcttaagttagctcatggtttttactacatactgctcttcagTCTCCTGCCAACAGAAAACAACAGAAGGATGAATGAAATCGACAGGGAGGTGAAGACGATCCTGAGGGGCATAATAGAGAAGAGACAGAAGGCAGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA