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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttacacctgatgatccatctggcctttccctcaacggtcaatgcccatcacctttcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTTTCCCTGATGCATCACGTTGTCATGGGTGATGATCCAGAGGTGAAGGCT

Basic information

species Zea mays
transcript GRMZM2G102231_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102231_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g14580.1 (Oryza sativa), 3'ss of exon 3
gtaagtt--tctttacacctgatg-atccatctg-gcctttccctcaacggtc--aatgcccatcacctttcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTTTCCCTGATGCATCACGTTGTCATGGGTGATGATCCAGAGGTGAAGGCT
|||| ||   | | |   |  ||  ||   |||| | |||   | | | | ||   |||  |        |    ||||| |    |  ||   || || |||  |     | |||| ||| ||||||||| ||||| |||||||| |||||||| ||||| ||| ||||||||||| | |||||||| || ||||| ||||| ||||||||||| |||||| ||
gtaatttatccatgatgaccaatatattgctctgagtcttgtgcactatgttcctgatgaaccctgtgcctttcaaattaga----atcacgtttgattcgttctttcttta-tgtggctt-cagATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44901216|gb|CK827761.1|CK827761
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTCGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|50325634|gb|CO520760.1|CO520760
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211004136|gb|FL435012.1|FL435012
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|14245028|gb|BG842966.2|BG842966
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|5649953|gb|AI920313.1|AI920313
EST:     ATCTT-ATGCCAA-GGAG-ACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: ATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|50338089|gb|CO533215.1|CO533215
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTTTCCCTGATGCATCACGTTGTCATGGGTGATGATCCAGAGGTGAAGGCT
     aattatagaa  TA-rich tract