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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggatagttcatctagttctagcccttgactttatgtttcaatctcttagttgtgaggattgatgttctgaccagatgttctttttttacatttcttcagTGATGTTGATGCCACAATGCTGGCATGCATTGCATTTTCCTGCCCCAATTTACAGTCCCTGGATATCAGCATGGCCAATAGCGCGGTCAACAGGATAACT

Basic information

species Zea mays
transcript GRMZM2G100121_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91874931|gb|EB404888.1|EB404888
EST:     TAGATGGTGTGATGCATCATTAGTCCATTTTTCAAATTTAGTGGAATGAG                         TGATGTTGATGCCACAATGCTGGCATGCATTGCATTTTCCTGCCCCAATTT
genomic: TAGATGGTGTGATGCATCATTAGTCCATTTTTCAAATTTAGTGGAATGAGgtaatgctag ... atttcttcagTGATGTTGATGCCACAATGCTGGCATGCATTGCATTTTCCTGCCCCAATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagttgtgaggattgatgttctgaccagatgttctttttttacatttcttcagTGATGTTGATGCCACAATGCTGGCATGCATTGCATTTTCCTGCCCCAATTTACAGTCCCTGGATATCAGCATGGCCAATAGCGCGGTCAACAGGATAACT
                    ttctgac  putative branch site (score: 2)
                               tgttctttttttacat  putative PPT
                                 ttctttttttacattt  TA-rich tract