Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149085278|gb|EE174783.2|EE174783EST: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCT GGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
genomic: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagc ... tggggtgcagGGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
EST:
gi|76909179|gb|DV163258.1|DV163258EST: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCT GGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
genomic: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagc ... tggggtgcagGGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
EST:
gi|74240729|gb|DT648643.1|DT648643EST: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCT GGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
genomic: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagc ... tggggtgcagGGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
EST:
gi|74243598|gb|DT651512.1|DT651512EST: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCT GGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
genomic: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagc ... tggggtgcagGGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
EST:
gi|78110769|gb|DV529167.1|DV529167EST: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCT GGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
genomic: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagc ... tggggtgcagGGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
EST:
gi|76918835|gb|DV167477.1|DV167477EST: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCT GGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
genomic: TGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagc ... tggggtgcagGGGCGAGAAGGCCTTCTGCAGCGACGAGTGCAGGAACGGGTTCATCGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTCTTCGTCGCCGGCGGCACCCGCTAGAGTCGTCGCGTCCGGCCGTTGCTGCTGCTGCATGAAGAGGCTGCTGGAGGACCGGGACATCTTCATCTACCTgtgagtgagctctgctggtttccatcaaatgcgtgtgatgtgtcatgtgagtgagacatgttccaacgctgttcggttcttgatttttgacggaacgtcttgtggtggggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA