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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatccgaattaatcttgtttctctctttgtgcgatttgggcgttccaaggttccattggatggatattattaaatggcgttcaatttttttagtc...

Basic information

species Zea mays
transcript GRMZM2G097164_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097164_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g48930.1 (Oryza sativa), 5'ss of exon 2
GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatccgaattaatcttgtttctctctttgtgcgatttgggcgttccaaggttccattggatggatattattaaatggcgttcaatttttttagtc-
|||||| ||||||||||| |||||||| |||| ||||||||||   ||||||||| ||||||| ||||| |||||||| |||||||| ||||| || |||||||  ||||| |||    |   | | |  |||      ||     || | |  |  ||   || | | | | || |  |      | ||| |     |  
GAAGAATCTCCACCTGTATCAGTTCCGCAACAACATCCCGCTCAGCACCGCCGCCACCGCCAATTTCACCCGCGGCGAGCTCGCCACCGCCCTGCGGAAGgtaccgatccggattggcttctctccccgttttccagtgttctattgt-cgattgcgcccaggggttggtctgatcagctatttaccgattgtggcgtttt

upper sequence: GRMZM2G097164_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G38970.1 (Glycine max), 5'ss of exon 2
GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatccgaattaatcttgtttctctctttgtgcgatttgggcgttccaaggttccattggatggatattattaaatggcgttcaatttttttagtc---
||||||| ||  | |||| |||||||| |||  |||||| ||  | ||||||||||||||||| ||||| || |||||||||||||| || || |||||||||        |    ||||    | | || |  | |  | |     ||   |      ||||    | ||  || || |   |  || ||  |  | |    
GAAGAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTTACCACCGCCGCCGCCGCCAATTTCACGCGTGGCGAACTCGCCACTGCTCTCCGCAAGgtatcttctaaaccctatctcccatatatcatc-tcctttctcacttttaggaaaacaaattgagaagctaaaatcaatttatg--catttgctccaatttag

upper sequence: GRMZM2G097164_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G44200.1 (Glycine max), 5'ss of exon 2
GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatccgaa----ttaatcttgtttctctctttgtgcgatttgggcgt-tccaaggttccattggatggatattattaaatggcgttcaatttttttagtc
||| ||| ||  | |||| |||||||| |||  |||||| ||| | ||||||||||||||||| |||||||| |||||||| ||||| || || |||||||||    | | ||    | | |||  | | ||   |  |  |  |    | | |   |      |||     | ||  || || |   | ||   ||  |     
GAAAAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTCACCACCGCCGCCGCCGCCAATTTCACACGTGGCGAACTTGCCACTGCTCTCCGCAAGgtatctcttctaaaccctaactctcatatatcatgtcctttggctctcacttataggaaaacaaattaagaagctaaaatcaatttatgctcttattcat-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211262505|gb|FL327826.1|FL327826
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211248362|gb|FL328676.1|FL328676
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGC-ACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211270103|gb|FL340197.1|FL340197
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211451444|gb|FL365473.1|FL365473
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211281117|gb|FL312213.1|FL312213
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|28188101|gb|CB179711.1|CB179711
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211047073|gb|FL348419.1|FL348419
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211010589|gb|FL355816.1|FL355816
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGC-ACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211020933|gb|FL325312.1|FL325312
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATT
EST: gi|211094167|gb|FL353100.1|FL353100
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211026559|gb|FL358132.1|FL358132
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211216139|gb|FL344292.1|FL344292
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211367005|gb|FL316922.1|FL316922
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTNGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211127775|gb|FL330736.1|FL330736
EST:     CCGCCGCCGCCAACTTCACACGCGGCAAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATTGATAAGGATGTTGG
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTAT-GATAAGGATGTTGG
EST: gi|33285490|gb|CF075285.1|CF075285
EST:     CCGCCGCCGCCGACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAA
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAA
EST: gi|211049148|gb|FL315723.1|FL315723
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATG
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATG
EST: gi|211009566|gb|FL317970.1|FL317970
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCYCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211170137|gb|FL323711.1|FL323711
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211280213|gb|FL366623.1|FL366623
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211232530|gb|FL315422.1|FL315422
EST:     CCGCCGC-GCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|33104116|gb|CF064076.1|CF064076
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211492547|gb|FL352077.1|FL352077
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211070129|gb|FL344103.1|FL344103
EST:     CGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCC-TTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211120599|gb|FL351201.1|FL351201
EST:     CCGCCGCCGC-AACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|19436548|gb|BM952958.1|BM952958
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211512825|gb|FL354901.1|FL354901
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211230850|gb|FL333961.1|FL333961
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211503051|gb|FL332839.1|FL332839
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGT
EST: gi|211087062|gb|FL366800.1|FL366800
EST:     CCGCCGCCGC-AACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211370217|gb|FL335354.1|FL335354
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGA
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGA
EST: gi|211277756|gb|FL330394.1|FL330394
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211377653|gb|FL316984.1|FL316984
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211220638|gb|FL341043.1|FL341043
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGAYAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211492288|gb|FL341332.1|FL341332
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211301699|gb|FL323433.1|FL323433
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|110519136|gb|EE023723.1|EE023723
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCCCAGG                         A-TCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGG
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGG
EST: gi|211283204|gb|FL331380.1|FL331380
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211381164|gb|FL350970.1|FL350970
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGC-ACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
EST: gi|211096725|gb|FL356867.1|FL356867
EST:     CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAG                         AATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT
genomic: CCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 202

GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGTGCTTCCCTCTACTACATCGACTACATTGCAACCTTGCACAAAATTGACA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 170

GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGTGCTTCCCTCTACTACATCGACTACATTGCAACCTTGCACAAAATTGACA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 141

GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGTGCTTCCCTCTACTACATCGACTACATTGCAACCTTGCACAAAATTGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 259

GAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGCGAACTCGCCACAGCCCTTCGCAAGgtactaatcc ... acattgtcagAATCCATATATGGTCAATATTATTCTTGGTGGTTATGATAAGGATGTTGGTGCTTCCCTCTACTACATCGACTACATTGCAACCTTGCACAAAATTGACA