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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgatgtcgtcaccttcgttcacgcagacccggccctcttgttaattggcttctcaagtatcgatcgtgcgtacgtgctgaactgctgactcggttcacgtaccatgtgcatgcatgatttggccccccaaaaaaaattgaagCACGGGAGGGTGCTCCTGCCGCCGGCGATCGCGGCCGACGAGCCGGTCTACGTGAACGCCAAGCAGTTCAACGGCATCCTCCGGCGGCGCCTGGCGCGCG

Basic information

species Zea mays
transcript GRMZM2G096016_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149076440|gb|EE165063.2|EE165063
EST:     TCTATGGCGCCACTGCGTACTATCATCCCTTCTACGGAGCCCAAGCTCTG                         CACGGGAGGGTGCTCCTGCCGCCGGCGATCGCGGCCGACGAGCCGGTCTAC
genomic: TCTATGGCGCCACTGCGTACTATCATCCCTTCTACGGAGCCCAAGCTCTGgtacgtacga ... aaaattgaagCACGGGAGGGTGCTCCTGCCGCCGGCGATCGCGGCCGACGAGCCGGTCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcggttcacgtaccatgtgcatgcatgatttggccccccaaaaaaaattgaagCACGGGAGGGTGCTCCTGCCGCCGGCGATCGCGGCCGACGAGCCGGTCTACGTGAACGCCAAGCAGTTCAACGGCATCCTCCGGCGGCGCCTGGCGCGCG
 tgctgac  putative branch site (score: 2)
                                         aaaaaaaattgaa  TA-rich tract