Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGTCCCGCCGTCCTCTCTTCTAGTCCAGGCCACTTCTCATGGCTGTGCACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAGgttggtctcccgatcccctttcagcctttcctctctctctctctctctctctctctctctctctctctctctctccaatttattcatcctcaacgaaaccactacaacgtcttgattccattcatcacccgtgcgttgtgttctatgatacatag

Basic information

species Zea mays
transcript GRMZM2G095811_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757228|gb|DY541369.1|DY541369
EST:     CACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAG                         GCCGGCGCTGGATAACGCAAGGAACGCGTCCGTTTTCATCAGCTCGGCGGT
genomic: CACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAGgttggtctcc ... tgatacatagGCCGGCGCTGGATAACGCAAGGAACGCGTCCGTTTTCATCAGCTCGGCGGT
EST: gi|211455751|gb|FL253950.1|FL253950
EST:     CACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAG                         GCCGGCGCTGGATAACGCAAGGAACGCGTCCGTTTTCATCAGCTCGGCGGT
genomic: CACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAGgttggtctcc ... tgatacatagGCCGGCGCTGGATAACGCAAGGAACGCGTCCGTTTTCATCAGCTCGGCGGT
EST: gi|71426774|gb|DR807824.1|DR807824
EST:     CACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAG                         GCCGGCGCTGGATAACGCAAGGAACGCGTCCGTTTTCATCAGCTCGGCGGT
genomic: CACACGCAGTACTTGTCCCATGCCTTCCCCTACGACCACAGCACCATCAGgttggtctcc ... tgatacatagGCCGGCGCTGGATAACGCAAGGAACGCGTCCGTTTTCATCAGCTCGGCGGT