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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAATTGTTGCACAGTTACGAGTCAGAGTTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAGGTTTATAATGAGTCGTACTAgtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcag

Basic information

species Zea mays
transcript GRMZM2G095084_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095084_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g55300.4 (Oryza sativa), 5'ss of exon 5
--------------------CTATAATTGTTGCACAGTTACGAGTCAGAGTTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAGGTTTATAATGAGTCGTACTAgtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagtt-ttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcag
                    ||||||||||||| || ||||| ||||  ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||   | || |     |   | || | ||    |  | |   |   ||   ||  |     || |  ||  |      || | |||||||| |  | |                                                                               
TAAGTTACTATCTTGTGGGGCTATAATTGTTGCGCAATTACGGGTCAAGGTTTTGGAGGAAACCCAATTCACATGTTCTGCTGGTATTGCTCACAATAAGgtttatatgcattcctttctttcgattgaagtttggtctcttttactctgtaaacctctcttcc-tattgcaatcctcacccaagatgttgctgtgttttgtag------------------------------------------------------------------------------

upper sequence: GRMZM2G095084_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G09400.1 (Glycine max), 5'ss of exon 5
--------------------CTATAATTGTTGCACAGTTACGAGTCAGAGTTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAGGTTTATAATGAGTCGTACTAgtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcag
                    || | |||||     |  |  |  | |  || ||| | || ||  ||||||||||||||||||| |||||||| |||||||    |||  ||  ||  | |||         |   |    |  ||||||   | |||   || |||  ||| ||| ||  |||       | ||  ||  || |    |  ||||| |  | || |                                                      
TAAGCTATTAGCTTGTGGGGCTCTCATTGTGTGTGACCTCAGGATGAAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGg----taaaaagcagtcttggtg---------tccccaaaattctgacaactttcttcctaaggaca-agttgttgatgcttta-------tatggccattaactggtgtctggttctt-ctctcag------------------------------------------------------