1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAGAGCTAATATCTGGTGATCAGAATGGAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTGgtgagtcactttctcatattccagtatcatggtactgctgtggaaagggaaatgcaagaaaacaattgatgtgttggttccaattatttag
species | Zea mays |
transcript | GRMZM2G094959_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTG GTGCCAGAAGTTGATACTGCTGTAAGATCTCTGACAGTCATGTGGGATGGGEST: gi|149101138|gb|EE187246.2|EE187246
genomic: GAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTGgtgagtcact ... aattatttagGTGCCAGAAGTTGATACTGCTGTAAGATCTCTGACAGTCATGTGGGATGGG
EST: GAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTG GTGCCAGAAGTTGATACTGCTGTAAGATCTCTGACAGTCATGTGGGATGGGEST: gi|32941525|gb|CF046344.1|CF046344
genomic: GAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTGgtgagtcact ... aattatttagGTGCCAGAAGTTGATACTGCTGTAAGATCTCTGACAGTCATGTGGGATGGG
EST: GAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTG GTGCCAGAAGTTGATACTGCTGTAAGATCTCTGACAGTCATGTGGGATGGG
genomic: GAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTGgtgagtcact ... aattatttagGTGCCAGAAGTTGATACTGCTGTAAGATCTCTGACAGTCATGTGGGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGCTAATATCTGGTGATCAGAATGGAAACATACGTGTATGGGATTTGGCTGCTAACTCATGCAGCTGTGAGTTGgtgagtcactttctcatattccagtatcatggtactgctgtggaaagggaaatgcaagaaaacaattgatgtgttggttccaattatttag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG