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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATAGTGATGATGATGACACACTGGAAATCTGGGATGATGAGGATGCTGGAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcatgctccccttggtgattgtaagcgtttactttattcttttttgagaaacctactatgcatttactttgcttcaatcatatatacaacgaca...

Basic information

species Zea mays
transcript GRMZM2G092497_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762158|gb|DY689885.1|DY689885
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACCAG                         GATTTCTTACATGAGATGTCACGGAAGGACGAAGAAGTTGATTCCTTACTT
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
EST: gi|18648720|gb|BM497539.1|BM497539
EST:     ATGATTCTGATGACGAG                         GATTTCTTACATGAGATGTCACGGAAGGACGAAAAAG-TGATTCCTTAGTT
genomic: ATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
EST: gi|211528668|gb|FL445662.1|FL445662
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAG                         GATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
EST: gi|78109829|gb|DV528245.1|DV528245
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAG                         GATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
EST: gi|76913046|gb|DV164985.1|DV164985
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAG                         GGATT-CTTACATGAGATGT
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagG-ATTTCTTACATGAGATGT
EST: gi|74238865|gb|DT646779.1|DT646779
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAG                         GATTTCTTACATGAGATGT
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGT
EST: gi|78088679|gb|DV517072.1|DV517072
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAG                         GATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGT-
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGTCACGGAAGGACGAAAAAGTTGATTCCTTAGTT
EST: gi|71447185|gb|DR828235.1|DR828235
EST:     GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAG                         GATTTCTTACATGAGATGTCACGGAAGGACGAAAAA
genomic: GAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcat ... ttctacacagGATTTCTTACATGAGATGTCACGGAAGGACGAAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATAGTGATGATGATGACACACTGGAAATCTGGGATGATGAGGATGCTGGAGGGAGAAGCACCAGGGTTGCTAACTCTGTTGATGATTCTGATGACGAGgtattttcatgctccccttggtgattgtaagcgtttactttattcttttttgagaaacctactatgcatttactttgcttcaatcatatatacaacgaca

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC