Sequence
atgc intronic sequence ATGC exonic sequencegtaacttctcctttgtttggtgcgagcatttctcaaaaactcctctagtccatacattacaagtttctttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092091_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g51910.1 (Oryza sativa), 3'ss of exon 4
gtaa-cttctcctttgtttggtgcgagcatttctcaaaaactcctctagtccatacattacaagtttctttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
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gtaaatttcttcttttatctgcaagaaaatcttcgagactatcttgtgctgtgcaacttact-gttgtcccctcacagATCACTGGTAAGGCAGTCATGCTTGATGAGATAATCAATTATGTACAGTCACTACAACGTCAAGTTGAG
upper sequence: GRMZM2G092091_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT1G10120.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtaacttctcctttgtttggtgcga-gcatttctcaa--aaactcctctagtccatacattacaagtttct-ttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
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gtattggacttagaggttacttttagcagtatggtttccaacgaaattttgctcaagttttcattgttggtaattgttcaactagATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAG
upper sequence: GRMZM2G092091_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv07s0151g00450.t01 (Vitis vinifera), 3'ss of exon 3
-----gtaacttctcctttgtttggtgcgagcatttctcaaaaactcctctagtccata-----cattacaagtttctttcgg-gcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
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gtgaattaacgaatgatttgtcactcttaaagagcttttaatgttgcttctaaattgtaattgacatgatgtgtttttacctttgaagATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAG
upper sequence: GRMZM2G092091_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv18s0001g08600.t01 (Vitis vinifera), 3'ss of exon 3
gtaacttctcctttgtttggtg-cgagcatttctcaaaaactcctctagtccatacattacaagtttctttcg-ggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
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gtaattggagggccagcttctgattaatttctttctttgatttcgttactgattagttttctgttatttgcaataaaagATTACTGGGAAGGCAGTAATGCTTGATGAGATTATCAATTATGTACAGTCACTGCAACAACAGGTTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211393687|gb|FL093754.1|FL093754EST: TAAGTGAGAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGATGCAGTAAG ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCA
genomic: TAAGTGAGAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGATGCAGTAAGgtaacttctc ... tttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCA
EST:
gi|211393688|gb|FL093755.1|FL093755EST: TAAGTGAGAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGATGCAGTAAG ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCA
genomic: TAAGTGAGAGAATGAAGCTTCTTCAAGATCTTGTTCCTGGATGCAGTAAGgtaacttctc ... tttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgagcatttctcaaaaactcctctagtccatacattacaagtttctttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
tttctttc CT-rich tract
atacatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacttctcctttgtttggtgcgagcatttctcaaaaactcctctagtccatacattacaagtttctttcgggcagATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG