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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTACAGCTTCGGCGTGATTTTGCTGGAGCTCATCTCTGGGCATGAACCCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGGgtaagaaagaagagtattcctgttggttctgctgaagcaaaagcgttaaataaataaataaataaatgcag

Basic information

species Zea mays
transcript GRMZM2G091632_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211223281|gb|FL370918.1|FL370918
EST:     CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGG                         GCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
genomic: CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGGgtaagaaaga ... ataaatgcagGCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
EST: gi|5791082|gb|AI977874.1|AI977874
EST:     CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGG                         GCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
genomic: CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGGgtaagaaaga ... ataaatgcagGCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
EST: gi|6448347|gb|AW181113.1|AW181113
EST:     CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGG                         GCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
genomic: CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGGgtaagaaaga ... ataaatgcagGCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
EST: gi|21891527|gb|BQ744740.1|BQ744740
EST:     CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGG                         GCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
genomic: CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGGgtaagaaaga ... ataaatgcagGCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
EST: gi|60401635|gb|DN234442.1|DN234442
EST:     CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGG                         GCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG
genomic: CCATCTCGAATGACAACTTTGGGCTCAACTGCCGGAACATTGTTGCGTGGgtaagaaaga ... ataaatgcagGCCCGATCGCACATCGAGAGCGGGAACATCCACGCCATCATTGATGAGTCG