1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taaactttatggaagatcgcggttcattctagtctgaacaggcgtttatacagttcccgtgctgcagtaagtttgatctcttcttgttttttaaacaaagGTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCATGCCGTCATCACATTCCGCCACGGTTACAGCACTAGCAGTAGCAATTGGA
species | Zea mays |
transcript | GRMZM2G091435_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCTGCTCGGGTTCGCCGTCGCCCAGTCCATCAAGTTCTTCGTCACACG GTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCATEST: gi|91871453|gb|EB401428.1|EB401428
genomic: GCCCTGCTCGGCTTCGCCGTCGCCCAGTCCATCAAGTTCTTCGTCACACGgtacgcccct ... ttaaacaaagGTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCAT
EST: GCCCTGCTCGGCTTCGCCGTCGCCCAGTCCATCAAGTTCTTCGTCACACG GTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCAT
genomic: GCCCTGCTCGGCTTCGCCGTCGCCCAGTCCATCAAGTTCTTCGTCACACGgtacgcccct ... ttaaacaaagGTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCAT
ttatacagttcccgtgctgcagtaagtttgatctcttcttgttttttaaacaaagGTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCATGCCGTCATCACATTCCGCCACGGTTACAGCACTAGCAGTAGCAATTGGA
gtttgat putative branch site (score: 26)
tttgatctcttcttgt CT-rich tract
ttgttttttaaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaactttatggaagatcgcggttcattctagtctgaacaggcgtttatacagttcccgtgctgcagtaagtttgatctcttcttgttttttaaacaaagGTACAAGGAGAACAGATGGGATCCCAAGCGGCTTATCGGCTCGGGTGGCATGCCGTCATCACATTCCGCCACGGTTACAGCACTAGCAGTAGCAATTGGA
- - - - - - - - - - - - - - - - -ctgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcag