1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGAAGACAGGAGCAGAAGCAAAAGATGAGTTGCTCAGTAACATTTTGTCAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatttcttgtttactagtgcaactagtatgcctaaatatttttacagcatggtttactgaactgatatattttatttattag
species | Zea mays |
transcript | GRMZM2G088261_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAAT GGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTCEST: gi|76280381|gb|DV019949.1|DV019949
genomic: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatt ... tatttattagGGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
EST: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAAT GGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTCEST: gi|93282882|gb|EB675146.1|EB675146
genomic: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatt ... tatttattagGGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
EST: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAAT GGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTCEST: gi|86473318|gb|DY239688.1|DY239688
genomic: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatt ... tatttattagGGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
EST: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAAT GGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATTTGATCAACTCEST: gi|88755725|gb|DY539866.1|DY539866
genomic: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatt ... tatttattagGGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
EST: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAAT GGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATTTGATCAACTCEST: gi|89251709|gb|DY623495.1|DY623495
genomic: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatt ... tatttattagGGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
EST: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAAT GGGGTAGTGCCACCCCAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
genomic: CAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatt ... tatttattagGGGGTAGTGCCACCACAACTGGCGAACACAGGTTCTTCATCTGATCAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAAGACAGGAGCAGAAGCAAAAGATGAGTTGCTCAGTAACATTTTGTCAAGACAAACAGCAGCTGGCTCTTCATCTGCAATCCCTTTAGCAAGCAATgtaaagaatttcttgtttactagtgcaactagtatgcctaaatatttttacagcatggtttactgaactgatatattttatttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA