1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtaattgcacatggtcaaatattcctggcattcattatgacttattgatattatcttgggggttgtgctaattccttgcatcgttgactgatttttacagGATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGG
species | Zea mays |
transcript | GRMZM2G088140_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAAT GATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGGEST: gi|71767660|gb|DR965597.1|DR965597
genomic: TGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAATgtaagccttg ... atttttacagGATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGG
EST: AAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAAT GATTCACATCACAAGGAAAGTGGACAGGA-CACGATGGGGAEST: gi|32847056|gb|CD986737.1|CD986737
genomic: AAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAATgtaagccttg ... atttttacagGATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGGA
EST: AAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAAT GATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGG
genomic: AAAGTGGCAGTGACAGTTCAAGCGAAGGGAGTGAAGGAAATTCTCACAATgtaagccttg ... atttttacagGATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGG
tgatattatcttgggggttgtgctaattccttgcatcgttgactgatttttacagGATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGG
tttttac CT-rich tract
tgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcacatggtcaaatattcctggcattcattatgacttattgatattatcttgggggttgtgctaattccttgcatcgttgactgatttttacagGATTCACATCACAAGGAAAGTGGACAGGAACACGATGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- aattgca
- - - - -catggtc
- - - - - - - - - - attcctg
- - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcta