1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttaatgttacatattcactacactttttctattaatattatactattctcacaatagttttaattaggttgctaatgacctggttctgcattttgatagGAAACTTTTGGTCGTTACCTCGACTTGCATGAGCTTTATAACGAGTTCATAAATTCCAAGTTTGGAACGCTAATGGAATACTCGACTTATGTTGGCTGTT
species | Zea mays |
transcript | GRMZM2G087472_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGCGTCCGCCACATGCTCGACCTCGTCGTCTCCACCTCCTGCAAGCTC GAAACTTTTGGTCGTTACCTCGACTTGCATGAGCTTTATAACGAGTTCATA
genomic: ACCGCGTCCGCCACATGCTCGACCTCGTCGTCTCCACCTCCTGCAAGCTCgtacgtccat ... attttgatagGAAACTTTTGGTCGTTACCTCGACTTGCATGAGCTTTATAACGAGTTCATA
attctcacaatagttttaattaggttgctaatgacctggttctgcattttgatagGAAACTTTTGGTCGTTACCTCGACTTGCATGAGCTTTATAACGAGTTCATAAATTCCAAGTTTGGAACGCTAATGGAATACTCGACTTATGTTGGCTGTT
tgctaat putative branch site (score: 6)
acaatagttttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatgttacatattcactacactttttctattaatattatactattctcacaatagttttaattaggttgctaatgacctggttctgcattttgatagGAAACTTTTGGTCGTTACCTCGACTTGCATGAGCTTTATAACGAGTTCATAAATTCCAAGTTTGGAACGCTAATGGAATACTCGACTTATGTTGGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - cactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttctgc