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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actaataatagtgttttggcagtagtttgttcaatagtatagagcatatttatgactaaatacttataactaacattctaacgggcgtacatttgtacagCTGAAGAGTGAATTTGAGGAACGATGGGCCAATGGAGAAATACCTGGATGGGGAAATAAAGGCGCAGAAAACGAGTCTAAAATAGATCTTGATTACTACA

Basic information

species Zea mays
transcript GRMZM2G087472_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211098458|gb|FL436363.1|FL436363
EST:     GTATCGCACAGAGCCATTGCAAGACGTCGATAAGANNNNNNNNAAAG                         CTGAAGAGTGAATTTGAGGAACGATGGGCCAATGGAGAAATACCTGGGATG
genomic: GTATCGCACAGAGCCATTGCAAGACGTCGATAAGATTTTTTTTAAAGgtcagtatta ... atttgtacagCTGAAGAGTGAATTTGAGGAACGATGGGCCAATGGAGAAATACCT-GGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttatgactaaatacttataactaacattctaacgggcgtacatttgtacagCTGAAGAGTGAATTTGAGGAACGATGGGCCAATGGAGAAATACCTGGATGGGGAAATAAAGGCGCAGAAAACGAGTCTAAAATAGATCTTGATTACTACA
                              ttctaac  putative branch site (score: 1)
           taaatacttataacta  TA-rich tract