Sequence
atgc intronic sequence ATGC exonic sequence...tagatcacatactcaacaaaaccaagtgcagcgaatcttaattcttttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G087192_T02 (Zea mays), 3'ss of exon 1
lower sequence: 13113.m00235 (Oryza sativa), 3'ss of exon 2
-tagatc--acatactcaacaaaaccaagtgcagcgaatcttaattcttttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
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acaattcctgcttatgggcttatggctagaactacaaaaccatctcttttatctatgcaatgatccatta---tcaaaatactgaatgtttttgtctttctagGGTAGTTCTCGCACCACTGACAAGGCAGCGATCCTATGGTAATGTTCCTCAGCCTCATGCCATTCTGTACTATCAGCAGAGAACAACCAAAGGAGGCCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211399636|gb|FL347340.1|FL347340EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTACCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAACGTTCCCCA
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
EST:
gi|88757701|gb|DY541842.1|DY541842EST: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAG GGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
genomic: GCCCCCCTCCTCACCCCCTACAAGATGGGAAAATTCGATGTTTCCCACAGgtacgcccct ... gtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
tcccttttctctgttt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagatcacatactcaacaaaaccaagtgcagcgaatcttaattcttttcgtgaaagaaggtccattcgatcctgagaatcccttttctctgtttgtccagGGTAGTCCTCGCACCACTGACGAGACAGCGGTCCTACGGCAATGTTCCTCAGCCTCATGCCATACTGTACTATCAGCAGAGGGCGACTAAAGGAGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG