Sequence
atgc intronic sequence ATGC exonic sequence...tgtccaggccaagtaggtggtagatagttaattactctattgagcacggccatgtgttttgtagtagcgaataaactaagcatgttttgcgccgcgggagGTGCAGGTCTGAGGCGGCACTACCGAGGGGTGAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAGGCGGCGCGGGTGTGGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G087059_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g32620.1 (Oryza sativa), 3'ss of exon 1
tgtccaggccaagtaggtggtagatagttaattactctattg--agcacggccatgtgttttgtagtagcgaataaactaagcatgttttgcgccgcgggagGTGCAGGTCTGAGGCGGCACTACCGAGGGGTGAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAGGCGGCGCGGGTGTGGCT------
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-----gaattagtcacggattaattagcaagttgcagtattattattattattatgggattaattagtgggaattaattagcttagt---gtgttttggtgggtgcagGGAGGAGGCGGCACTACAGAGGTGTTCGACAGCGGCCATGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGAAGAAGGCGGCGAGGGTGTGGCTGGGGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acggccatgtgttttgtagtagcgaataaactaagcatgttttgcgccgcgggagGTGCAGGTCTGAGGCGGCACTACCGAGGGGTGAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAGGCGGCGCGGGTGTGGCT
aataaactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtccaggccaagtaggtggtagatagttaattactctattgagcacggccatgtgttttgtagtagcgaataaactaagcatgttttgcgccgcgggagGTGCAGGTCTGAGGCGGCACTACCGAGGGGTGAGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGGGACCCCAAGAAGGCGGCGCGGGTGTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- -ccaggcc
- - - - - - - - - - - - - - - - - - - - - - - - gccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcatg