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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg...

Basic information

species Zea mays
transcript GRMZM2G086845_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g66940.1 (Oryza sativa), 5'ss of exon 1
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg--------
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||     || |||      |   |    |  ||| ||| || |  | |||  | ||| |   |   |    |  |  | ||  |  ||  ||  |          
CCTCCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCCGACATGCTCCTCACCCACGCCGAGCTCAACGTCGAGCTCATCAAGAGGgtaagcc---ccccgctg----atctccttatcccccctccgtgttc-ttctcatctccgcgatctgcggaggaggcagttccgttccacccgatcccgtcgcgcgcg

upper sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgcca--cgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg
||| ||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||   |||| || |||||  |||| |||||||     ||| |        | |      |     | ||| ||    |      |   |||     |   | |||    ||  |  ||  |  || |    |  | |||
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgt-atgagttgagatgtgtgat-ctg

upper sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA15G03430.1 (Glycine max), 5'ss of exon 1
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg-
||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||   |||| || |||||| | || |||||||     ||| |        | |     | |||       ||   ||   |   ||  |   ||   | ||   |  |   |   |              ||   || 
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACCGGAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAACCTTGAACTCATCAGATCTgtatgcatcttttccctctctctcgctctctctactt-tctcggaaaatatttaaccttttcccggaaaacgaagtctttgtttcgtgattccatgtatga

upper sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G13580.1 (Glycine max), 5'ss of exon 1
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatc-tgcggacagccttattgctg--
||| ||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||||||||||||  |||| || |||||  |||| |||||||     ||| |  || | |        ||   | |      |  | ||||  | |  ||  |     |  ||   |   | ||  | || ||  |    |  |||||  
CCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCACGCCCGAAGATCTCAATCTCGAACTCATCAGATCTgtacgcaaatctattttct--caattctcaactttcagttcttgtcgtttttcttcgtta-gtgtttgtgtttcacgcgcgtgtggtaatggattatgctgag

upper sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G05580.1 (Glycine max), 5'ss of exon 1
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgccacgcca--cggtaacccatccttggtgatcctcgcccccgt-gccttcacgccccgcgatctgcggacagccttattgctg
||| ||||||||||||||||| ||||||||||||||| | |||||||| || ||||||||||||||  |||| || |||||  |||| |||||||     |||||  || | |   ||   | |  |   | ||    |  | ||  |  ||||  |     | |  ||   |   | ||   || ||| |   |        
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGTGCCGACATGCTCCTCACGCCCGAAGATCTCAATCTCGAACTCATCAGATCCgtaagcaaatctatctcaattctcaactttcagttcttctccttttttcttcctttcttagttagtgtttgtgtttcacg-cgtgtggaaatgatgggctt--

upper sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagcca-cgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg-
 || ||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || |   | || ||||||||| ||||||||||       ||| |||    |  |  |   |    |  | |  | |  ||  |  |  |||         ||     |  | | | ||||| |  |  |  || |  ||  
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttt-tccctttagaattgagaagattctcggagatcttcc-atggatttctctcttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14245051|gb|BG873633.1|BG873633
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|71771104|gb|DR969041.1|DR969041
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211073873|gb|FL165063.1|FL165063
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211079353|gb|FL165088.1|FL165088
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211079355|gb|FL165090.1|FL165090
EST:     CTGACATGCTCCTCACCGGCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGC
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211073866|gb|FL165056.1|FL165056
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTTCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCCG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCC-G
EST: gi|148963406|gb|EE014419.2|EE014419
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211076614|gb|FL165076.1|FL165076
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|89761060|gb|DY689225.1|DY689225
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|148961934|gb|EE012727.2|EE012727
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|26559431|gb|CA831666.1|CA831666
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|149101490|gb|EE187610.2|EE187610
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211079352|gb|FL165087.1|FL165087
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|71767962|gb|DR965899.1|DR965899
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211079346|gb|FL165081.1|FL165081
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|71444545|gb|DR825595.1|DR825595
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|148958586|gb|EC904833.2|EC904833
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|71768119|gb|DR966056.1|DR966056
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|33467477|gb|CF244526.1|CF244526
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|148954328|gb|EC899739.2|EC899739
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|148954801|gb|EC900268.2|EC900268
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|78085860|gb|DV514253.1|DV514253
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211071135|gb|FL165049.1|FL165049
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|91053379|gb|EB163797.1|EB163797
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|76020672|gb|DT947842.1|DT947842
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211076605|gb|FL165067.1|FL165067
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211079356|gb|FL165091.1|FL165091
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|67040844|gb|CO467099.1|CO467099
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTTCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|76933297|gb|DV173404.1|DV173404
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|91048482|gb|EB158900.1|EB158900
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|149077868|gb|EE166596.2|EE166596
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCCG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCC-G
EST: gi|78118652|gb|DV537036.1|DV537036
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|29544459|gb|CB604839.1|CB604839
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|67039858|gb|CO466113.1|CO466113
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|50325899|gb|CO521025.1|CO521025
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211071136|gb|FL165050.1|FL165050
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|148965165|gb|EE015977.2|EE015977
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|88758268|gb|DY542409.1|DY542409
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|50339578|gb|CO534704.1|CO534704
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211076606|gb|FL165068.1|FL165068
EST:     CTGACATGCTGCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTTCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211073872|gb|FL165062.1|FL165062
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|18963203|gb|BM660299.1|BM660299
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTTCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|87157693|gb|DY402482.1|DY402482
EST:     CTGACATGCTCCTTACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|148930975|gb|EC873497.2|EC873497
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|89757452|gb|DY687046.1|DY687046
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|71425442|gb|DR806673.1|DR806673
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|78079107|gb|DV507519.1|DV507519
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|211076609|gb|FL165071.1|FL165071
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
EST: gi|76287242|gb|DV026810.1|DV026810
EST:     CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGG                         GCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG
genomic: CTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 44 (downstream exon)
Score: 50

CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGGACAGCACATCTCCGTGCCATGGAGATTGCCAAAGAGGCAGGTGCACTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 243

CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGGACAGCACATCTCCGTGCCATGGAGATTGCCAAAGAGGCAGGTGCACTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 242

CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGGACAGCACATCTCCGTGCCATGGAGATTGCCAAAGAGGCAGGTGCACTGC


Block sizes: 46 (upstream exon), 40 (downstream exon)
Score: 66

CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaag ... ttttctacagGCTGCGGTCTTCCACTACGGATCAATAAGCTTGATTGCTGAGCCTTGCCGGACAGCACATCTCCGTGCCATGGAGATTGCCAAAGAGGCAGGTGCACTGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccccgc